Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CQP61_RS07650 Genome accession   NZ_CP033635
Coordinates   1015783..1016520 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli isolate ECCNB12-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1010783..1021520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS07620 (CQP61_07620) yfiL 1010941..1011306 (-) 366 WP_001353010.1 DUF2799 domain-containing protein -
  CQP61_RS07625 (CQP61_07625) aroF 1011516..1012586 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CQP61_RS07630 (CQP61_07630) tyrA 1012597..1013718 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CQP61_RS07635 (CQP61_07635) pheA 1013761..1014921 (-) 1161 WP_000200124.1 bifunctional chorismate mutase/prephenate dehydratase -
  CQP61_RS07640 (CQP61_07640) pheL 1015020..1015067 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CQP61_RS07645 (CQP61_07645) raiA 1015171..1015512 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CQP61_RS07650 (CQP61_07650) comL 1015783..1016520 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  CQP61_RS07655 (CQP61_07655) rluD 1016655..1017635 (+) 981 WP_000079097.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CQP61_RS07660 (CQP61_07660) yfiH 1017632..1018363 (+) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  CQP61_RS07665 (CQP61_07665) clpC 1018493..1021066 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=284016 CQP61_RS07650 WP_000197686.1 1015783..1016520(-) (comL) [Escherichia coli isolate ECCNB12-2]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=284016 CQP61_RS07650 WP_000197686.1 1015783..1016520(-) (comL) [Escherichia coli isolate ECCNB12-2]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCTGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376