Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EFV54_RS01840 Genome accession   NZ_CP033607
Coordinates   340011..340607 (+) Length   198 a.a.
NCBI ID   WP_003131648.1    Uniprot ID   Q9CIL6
Organism   Lactococcus lactis strain IL1403     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 335011..345607
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFV54_RS01825 (EFV54_01825) ahpC 335382..335945 (+) 564 WP_003131651.1 alkyl hydroperoxide reductase subunit C -
  EFV54_RS01830 (EFV54_01830) ahpF 336012..337541 (+) 1530 WP_010905291.1 alkyl hydroperoxide reductase subunit F -
  EFV54_RS01835 (EFV54_01835) - 337707..339872 (+) 2166 WP_003131649.1 penicillin-binding transpeptidase domain-containing protein -
  EFV54_RS01840 (EFV54_01840) recR 340011..340607 (+) 597 WP_003131648.1 recombination mediator RecR Machinery gene
  EFV54_RS01845 (EFV54_01845) - 340724..341773 (+) 1050 WP_010905293.1 D-alanine--D-alanine ligase -
  EFV54_RS01850 (EFV54_01850) murF 341848..343170 (+) 1323 WP_010905294.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  EFV54_RS01855 (EFV54_01855) - 343340..344992 (+) 1653 WP_003131645.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21909.22 Da        Isoelectric Point: 4.8226

>NTDB_id=283820 EFV54_RS01840 WP_003131648.1 340011..340607(+) (recR) [Lactococcus lactis strain IL1403]
MYYPEPIARLIESFSKLPGIGQKTATRLAFYTIGMEDQDVNEFAKNLLSAKRDLSFCSICGNLTESDPCAICTDPTRDRT
TILVVEESKDVLAMEKIREYRGLYHVLHGTISPMNGISPDEINVKTLITRLMDSEVKEVIIATNATSDGEATAMYLARMI
KPAGIKVTRLARGLAVGSDIEYADEITLSKAVENRLEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=283820 EFV54_RS01840 WP_003131648.1 340011..340607(+) (recR) [Lactococcus lactis strain IL1403]
ATGTATTATCCTGAACCTATTGCTCGCCTGATTGAGTCGTTTTCAAAATTACCAGGGATTGGTCAAAAAACAGCGACTCG
ATTGGCTTTTTATACGATTGGCATGGAAGATCAAGATGTCAATGAATTTGCAAAAAATCTTCTTTCAGCAAAACGGGATT
TGAGTTTTTGCTCGATTTGTGGGAATTTAACAGAAAGTGATCCTTGCGCCATTTGTACCGACCCAACGCGTGATCGAACA
ACTATATTGGTCGTTGAAGAATCTAAAGATGTTCTTGCTATGGAAAAAATTCGGGAATATCGAGGACTTTATCATGTTTT
GCATGGTACGATTAGTCCAATGAATGGGATTTCTCCTGATGAAATTAATGTTAAAACATTGATTACAAGATTAATGGATT
CAGAGGTTAAAGAAGTGATCATCGCAACTAATGCCACTTCTGACGGAGAAGCAACCGCCATGTATCTGGCTCGAATGATT
AAGCCTGCAGGAATTAAAGTGACTCGCTTGGCTCGTGGATTAGCTGTAGGCTCTGATATAGAATACGCAGATGAAATTAC
TTTATCAAAAGCGGTAGAGAATCGGTTGGAAATTTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

78.283

100

0.783
  recR Bacillus subtilis subsp. subtilis str. 168

59.596

100

0.596
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485