Detailed information    

insolico Bioinformatically predicted

Overview

Name   yaaT   Type   Regulator
Locus tag   EFD52_RS02000 Genome accession   NZ_CP033606
Coordinates   390617..391399 (+) Length   260 a.a.
NCBI ID   WP_010905316.1    Uniprot ID   Q9CIG2
Organism   Lactococcus lactis strain IL6288     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 385617..396399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD52_RS01975 (EFD52_01975) vicX 385640..386452 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  EFD52_RS01980 (EFD52_01980) vicK 386623..388065 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  EFD52_RS01985 (EFD52_01985) yycF 388058..388759 (-) 702 WP_003131580.1 response regulator YycF -
  EFD52_RS01990 (EFD52_01990) tmk 388937..389572 (+) 636 WP_003131575.1 dTMP kinase -
  EFD52_RS01995 (EFD52_01995) - 389705..390565 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  EFD52_RS02000 (EFD52_02000) yaaT 390617..391399 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator
  EFD52_RS02005 (EFD52_02005) yabA 391392..391718 (+) 327 WP_010905317.1 DNA replication initiation control protein YabA -
  EFD52_RS02010 (EFD52_02010) rsmI 391718..392593 (+) 876 WP_010905318.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  EFD52_RS02015 (EFD52_02015) - 392670..392861 (-) 192 WP_003131566.1 hypothetical protein -
  EFD52_RS02020 (EFD52_02020) mvk 392924..393856 (-) 933 WP_003131564.1 mevalonate kinase -
  EFD52_RS02025 (EFD52_02025) mvaD 394162..395118 (+) 957 WP_010905319.1 diphosphomevalonate decarboxylase -
  EFD52_RS02030 (EFD52_02030) - 395105..396094 (+) 990 WP_003131562.1 mevalonate kinase -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29803.27 Da        Isoelectric Point: 6.0566

>NTDB_id=283744 EFD52_RS02000 WP_010905316.1 390617..391399(+) (yaaT) [Lactococcus lactis strain IL6288]
MIYEIKFAHGESNVFAISDIELAPQTEVILRSDKGNFYGKIVREISEEANLEIHHTIVREVNEDDLQVIAKLEERSKQAK
DKVRQLVIEQGLEMKIIDVAYNFDQMQLFISFTAENRVDFRLLLRELATTFRIRIELRQIGPRDAAKIHGGLGPCGRPLC
CSEFVYEFPNVSIKMAKNQNLSLKQNKLNGLCGRLMCCLTYEDSFYKEAQQLFPDFGEFVTTSEGKGKVVGLNVLKNRVK
IRFGEYSKDFELAEIEVNHG

Nucleotide


Download         Length: 783 bp        

>NTDB_id=283744 EFD52_RS02000 WP_010905316.1 390617..391399(+) (yaaT) [Lactococcus lactis strain IL6288]
ATGATTTATGAAATAAAATTTGCACATGGCGAATCAAATGTATTTGCAATAAGTGATATAGAACTTGCTCCACAAACAGA
AGTTATCCTTCGTTCAGATAAGGGAAACTTTTACGGAAAAATTGTACGTGAAATTTCTGAAGAAGCGAATCTTGAAATTC
ACCACACGATTGTGCGTGAAGTAAATGAGGATGATCTCCAAGTTATTGCAAAACTTGAAGAACGTTCTAAACAAGCCAAA
GATAAAGTTCGCCAACTTGTCATCGAACAAGGTTTGGAAATGAAAATTATTGATGTTGCTTATAATTTCGACCAAATGCA
ACTTTTTATTTCGTTTACAGCAGAGAATCGTGTTGATTTTCGATTGCTTTTGCGTGAGTTGGCAACAACTTTTAGAATTA
GGATTGAACTTCGCCAAATTGGGCCAAGAGATGCGGCTAAAATTCATGGTGGACTTGGACCTTGTGGACGTCCTTTGTGC
TGTTCTGAGTTTGTTTATGAATTTCCAAATGTTTCAATCAAAATGGCCAAAAATCAAAATCTATCTTTGAAACAAAATAA
ATTGAACGGTCTTTGCGGTCGTTTGATGTGCTGTTTAACTTATGAAGATAGTTTTTATAAAGAAGCCCAACAACTTTTCC
CAGATTTTGGTGAGTTTGTAACTACCTCAGAAGGAAAAGGAAAAGTTGTTGGCTTAAATGTTTTAAAAAATAGAGTAAAA
ATCCGCTTTGGAGAATATAGCAAGGATTTTGAACTTGCAGAAATTGAGGTGAATCATGGCTGA

Domains

Predicted by InterProScan.

PSP1 C-terminal conserved region (PSP1)

(56-140)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  yaaT Bacillus subtilis subsp. subtilis str. 168

46.119

84.231

0.388