Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   EFD52_RS01975 Genome accession   NZ_CP033606
Coordinates   385640..386452 (-) Length   270 a.a.
NCBI ID   WP_003131583.1    Uniprot ID   Q9CIG7
Organism   Lactococcus lactis strain IL6288     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 380640..391452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD52_RS01950 (EFD52_01950) ytpR 380866..381492 (+) 627 WP_003131594.1 YtpR family tRNA-binding protein -
  EFD52_RS01955 (EFD52_01955) - 381655..382995 (+) 1341 WP_010905313.1 FAD-dependent oxidoreductase -
  EFD52_RS01960 (EFD52_01960) - 383085..383474 (+) 390 WP_010905314.1 single-stranded DNA-binding protein -
  EFD52_RS01965 (EFD52_01965) groES 383594..383878 (+) 285 WP_003131589.1 co-chaperone GroES -
  EFD52_RS01970 (EFD52_01970) groL 383966..385594 (+) 1629 WP_003131585.1 chaperonin GroEL -
  EFD52_RS01975 (EFD52_01975) vicX 385640..386452 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase Regulator
  EFD52_RS01980 (EFD52_01980) vicK 386623..388065 (-) 1443 WP_010905315.1 cell wall metabolism sensor histidine kinase WalK Regulator
  EFD52_RS01985 (EFD52_01985) yycF 388058..388759 (-) 702 WP_003131580.1 response regulator YycF -
  EFD52_RS01990 (EFD52_01990) tmk 388937..389572 (+) 636 WP_003131575.1 dTMP kinase -
  EFD52_RS01995 (EFD52_01995) - 389705..390565 (+) 861 WP_003131573.1 DNA polymerase III subunit delta' -
  EFD52_RS02000 (EFD52_02000) yaaT 390617..391399 (+) 783 WP_010905316.1 stage 0 sporulation family protein Regulator

Sequence

Protein


Download         Length: 270 a.a.        Molecular weight: 30522.37 Da        Isoelectric Point: 5.8494

>NTDB_id=283741 EFD52_RS01975 WP_003131583.1 385640..386452(-) (vicX) [Lactococcus lactis strain IL6288]
MTEQNGFKYSILASGSTGNSFYLETPKKKILVDAGLSGKKIESLLSEIDRDIHDIDALLITHEHSDHIKGIGVLARKYGI
DLYANEDTWSELDSKNALGKIPVEQKHLFEMGKTMTFGDIDIESFGVSHDAIAPQFYRFMKDNKSFVMLTDTGYVSDRMR
GTIENADAYLMESNHDIEILRMGAYPWRTKQRILSDQGHLSNEDGAEAAFSIHGNKTKRIFLGHLSLNNNIKELAHLTMD
GYLQQHDVDTKKDLKILDTSHEHASQLYDI

Nucleotide


Download         Length: 813 bp        

>NTDB_id=283741 EFD52_RS01975 WP_003131583.1 385640..386452(-) (vicX) [Lactococcus lactis strain IL6288]
ATGACTGAACAAAATGGCTTTAAATATTCCATTTTAGCCTCTGGTTCAACAGGAAATTCTTTTTACTTAGAAACTCCAAA
GAAAAAAATTCTTGTTGATGCCGGACTATCTGGAAAAAAAATAGAAAGTTTACTATCAGAAATTGACCGTGACATTCATG
ATATTGATGCTTTATTAATTACCCATGAACATAGTGACCATATCAAAGGGATTGGTGTTTTGGCAAGAAAATATGGTATT
GACCTTTACGCAAATGAAGATACTTGGTCTGAACTAGATAGTAAAAATGCTTTAGGAAAAATCCCTGTTGAACAAAAACA
TCTGTTTGAAATGGGAAAAACAATGACTTTTGGTGATATTGATATTGAATCTTTCGGCGTGAGTCACGATGCTATCGCAC
CACAGTTTTATCGTTTCATGAAAGATAACAAAAGTTTTGTTATGCTAACTGATACAGGTTATGTATCCGATAGAATGCGT
GGAACCATTGAAAATGCAGATGCTTATCTTATGGAATCAAACCATGACATTGAGATACTCCGCATGGGAGCTTATCCTTG
GCGGACAAAGCAACGTATCCTAAGTGACCAAGGCCACTTATCTAATGAGGACGGCGCTGAGGCTGCTTTTAGTATTCATG
GTAATAAGACAAAACGAATTTTTCTAGGGCACTTGAGTTTAAATAATAATATCAAAGAACTTGCTCATCTTACTATGGAT
GGTTACTTACAGCAACATGATGTCGATACCAAAAAGGACTTGAAGATCCTTGATACTAGTCACGAACATGCTAGTCAACT
TTACGATATTTAG

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(29-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIG7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

68.519

100

0.685