Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EFD52_RS01705 Genome accession   NZ_CP033606
Coordinates   325082..325678 (+) Length   198 a.a.
NCBI ID   WP_003131648.1    Uniprot ID   Q9CIL6
Organism   Lactococcus lactis strain IL6288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 320082..330678
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD52_RS01690 (EFD52_01690) ahpC 320453..321016 (+) 564 WP_003131651.1 alkyl hydroperoxide reductase subunit C -
  EFD52_RS01695 (EFD52_01695) ahpF 321083..322612 (+) 1530 WP_010905291.1 alkyl hydroperoxide reductase subunit F -
  EFD52_RS01700 (EFD52_01700) - 322778..324943 (+) 2166 WP_003131649.1 penicillin-binding transpeptidase domain-containing protein -
  EFD52_RS01705 (EFD52_01705) recR 325082..325678 (+) 597 WP_003131648.1 recombination mediator RecR Machinery gene
  EFD52_RS01710 (EFD52_01710) - 325795..326844 (+) 1050 WP_010905293.1 D-alanine--D-alanine ligase -
  EFD52_RS01715 (EFD52_01715) murF 326919..328241 (+) 1323 WP_010905294.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  EFD52_RS01720 (EFD52_01720) - 328411..330063 (+) 1653 WP_003131645.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21909.22 Da        Isoelectric Point: 4.8226

>NTDB_id=283736 EFD52_RS01705 WP_003131648.1 325082..325678(+) (recR) [Lactococcus lactis strain IL6288]
MYYPEPIARLIESFSKLPGIGQKTATRLAFYTIGMEDQDVNEFAKNLLSAKRDLSFCSICGNLTESDPCAICTDPTRDRT
TILVVEESKDVLAMEKIREYRGLYHVLHGTISPMNGISPDEINVKTLITRLMDSEVKEVIIATNATSDGEATAMYLARMI
KPAGIKVTRLARGLAVGSDIEYADEITLSKAVENRLEI

Nucleotide


Download         Length: 597 bp        

>NTDB_id=283736 EFD52_RS01705 WP_003131648.1 325082..325678(+) (recR) [Lactococcus lactis strain IL6288]
ATGTATTATCCTGAACCTATTGCTCGCCTGATTGAGTCGTTTTCAAAATTACCAGGGATTGGTCAAAAAACAGCGACTCG
ATTGGCTTTTTATACGATTGGCATGGAAGATCAAGATGTCAATGAATTTGCAAAAAATCTTCTTTCAGCAAAACGGGATT
TGAGTTTTTGCTCGATTTGTGGGAATTTAACAGAAAGTGATCCTTGCGCCATTTGTACCGACCCAACGCGTGATCGAACA
ACTATATTGGTCGTTGAAGAATCTAAAGATGTTCTTGCTATGGAAAAAATTCGGGAATATCGAGGACTTTATCATGTTTT
GCATGGTACGATTAGTCCAATGAATGGGATTTCTCCTGATGAAATTAATGTTAAAACATTGATTACAAGATTAATGGATT
CAGAGGTTAAAGAAGTGATCATCGCAACTAATGCCACTTCTGACGGAGAAGCAACCGCCATGTATCTGGCTCGAATGATT
AAGCCTGCAGGAATTAAAGTGACTCGCTTGGCTCGTGGATTAGCTGTAGGCTCTGATATAGAATACGCAGATGAAATTAC
TTTATCAAAAGCGGTAGAGAATCGGTTGGAAATTTGA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CIL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

78.283

100

0.783
  recR Bacillus subtilis subsp. subtilis str. 168

59.596

100

0.596
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485