Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   EEL45_RS18745 Genome accession   NZ_CP033605
Coordinates   3559245..3559982 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli O157:H7 strain TR01     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3554245..3564982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEL45_RS18730 (EEL45_18730) clpC 3554699..3557272 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  EEL45_RS18735 (EEL45_18735) yfiH 3557402..3558133 (-) 732 WP_000040130.1 purine nucleoside phosphorylase YfiH -
  EEL45_RS18740 (EEL45_18740) rluD 3558130..3559110 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  EEL45_RS18745 (EEL45_18745) comL 3559245..3559982 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  EEL45_RS18750 (EEL45_18750) raiA 3560253..3560594 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  EEL45_RS18755 (EEL45_18755) pheL 3560698..3560745 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  EEL45_RS18760 (EEL45_18760) pheA 3560844..3562004 (+) 1161 WP_123178565.1 bifunctional chorismate mutase/prephenate dehydratase -
  EEL45_RS18765 (EEL45_18765) tyrA 3562047..3563168 (-) 1122 WP_123178566.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  EEL45_RS18770 (EEL45_18770) aroF 3563179..3564249 (-) 1071 WP_001168032.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  EEL45_RS18775 (EEL45_18775) yfiL 3564459..3564824 (+) 366 WP_001301878.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=283685 EEL45_RS18745 WP_000197686.1 3559245..3559982(+) (comL) [Escherichia coli O157:H7 strain TR01]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=283685 EEL45_RS18745 WP_000197686.1 3559245..3559982(+) (comL) [Escherichia coli O157:H7 strain TR01]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTATGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376