Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EES41_RS29800 Genome accession   NZ_CP033581
Coordinates   6669588..6670238 (-) Length   216 a.a.
NCBI ID   WP_008741147.1    Uniprot ID   A0ABZ1RGV5
Organism   Streptomyces sp. ADI95-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6664588..6675238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS29785 (EES41_29780) - 6666111..6666962 (-) 852 WP_123081087.1 alpha/beta fold hydrolase -
  EES41_RS29790 (EES41_29785) - 6667249..6668043 (+) 795 WP_123081088.1 GntR family transcriptional regulator -
  EES41_RS29795 (EES41_29790) - 6668335..6669489 (-) 1155 WP_008741146.1 ROK family transcriptional regulator -
  EES41_RS29800 (EES41_29795) vraR 6669588..6670238 (-) 651 WP_008741147.1 response regulator transcription factor Regulator
  EES41_RS29805 (EES41_29800) - 6670243..6671418 (-) 1176 WP_123081089.1 sensor histidine kinase -
  EES41_RS29810 (EES41_29805) - 6671526..6672437 (+) 912 WP_123081090.1 ABC transporter ATP-binding protein -
  EES41_RS29815 (EES41_29810) - 6672475..6673224 (+) 750 WP_123081091.1 ABC transporter permease subunit -
  EES41_RS29820 (EES41_29815) - 6673265..6673699 (+) 435 WP_123081092.1 hypothetical protein -
  EES41_RS29825 (EES41_29820) mug 6673725..6674273 (-) 549 WP_123082776.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23187.83 Da        Isoelectric Point: 4.8419

>NTDB_id=283643 EES41_RS29800 WP_008741147.1 6669588..6670238(-) (vraR) [Streptomyces sp. ADI95-16]
MPVTVLLVDDEPLVRAGLRAVLDAQPDIEVVGEAADGASVVPLVRQLRPDVVAMDVRMPLLDGIQATRAVLRTVDSPPKI
LVVTTFENDEYVYEALRAGADGFLLKRSRPSEIVHAVRLVAEGETLLFPAAVRALAAEYGNRGARAVLERAALTEREEAV
LRLMARGLTNVEIASELIVGTETVKSHVSAILAKLGARDRTQAVIMAYESGFVSPA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=283643 EES41_RS29800 WP_008741147.1 6669588..6670238(-) (vraR) [Streptomyces sp. ADI95-16]
ATGCCGGTTACCGTACTGCTTGTCGATGACGAACCCCTCGTGCGCGCGGGTCTGCGCGCCGTCCTGGACGCCCAGCCCGA
CATCGAGGTGGTGGGTGAGGCCGCGGACGGGGCCTCCGTGGTCCCGCTGGTCCGGCAGCTGAGGCCGGACGTGGTGGCGA
TGGACGTGCGGATGCCGCTGCTCGACGGGATCCAGGCGACCCGGGCGGTACTGCGGACCGTGGACTCCCCGCCGAAGATC
CTCGTCGTGACGACCTTCGAGAACGACGAGTACGTCTACGAGGCACTGCGGGCGGGGGCGGACGGCTTCCTGCTGAAGCG
CTCGCGGCCCTCGGAGATCGTGCACGCGGTACGGCTGGTGGCGGAGGGCGAGACGCTGCTGTTCCCCGCCGCGGTGCGGG
CCCTGGCCGCGGAGTACGGGAACCGCGGCGCGCGGGCGGTGCTGGAGCGGGCCGCGCTGACCGAGCGGGAGGAGGCAGTG
CTGCGGCTGATGGCGCGGGGTTTGACCAACGTGGAGATCGCCTCCGAGCTGATCGTCGGCACGGAGACGGTGAAGTCCCA
TGTCAGCGCGATCCTGGCGAAACTGGGGGCACGGGACCGGACGCAGGCGGTCATCATGGCGTACGAGTCGGGGTTCGTCT
CTCCCGCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-118)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.465

99.537

0.403
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.366