Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EES41_RS28365 Genome accession   NZ_CP033581
Coordinates   6353660..6354373 (-) Length   237 a.a.
NCBI ID   WP_254211590.1    Uniprot ID   -
Organism   Streptomyces sp. ADI95-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6348660..6359373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS28345 - 6349331..6350992 (-) 1662 Protein_5555 FAD-binding oxidoreductase -
  EES41_RS28350 (EES41_28345) - 6351055..6351786 (+) 732 WP_123080873.1 TetR/AcrR family transcriptional regulator -
  EES41_RS28355 (EES41_28350) - 6351805..6352386 (-) 582 WP_123080874.1 TetR/AcrR family transcriptional regulator -
  EES41_RS28360 (EES41_28355) - 6352535..6353548 (+) 1014 WP_123080875.1 agmatine/peptidylarginine deiminase -
  EES41_RS28365 (EES41_28360) vraR 6353660..6354373 (-) 714 WP_254211590.1 response regulator transcription factor Regulator
  EES41_RS28370 (EES41_28365) - 6354370..6355614 (-) 1245 WP_123082742.1 histidine kinase -
  EES41_RS28375 (EES41_28370) - 6355769..6356938 (+) 1170 WP_164495963.1 serine hydrolase -
  EES41_RS28380 (EES41_28375) - 6357308..6358765 (-) 1458 WP_008738060.1 catalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 24964.72 Da        Isoelectric Point: 6.2656

>NTDB_id=283640 EES41_RS28365 WP_254211590.1 6353660..6354373(-) (vraR) [Streptomyces sp. ADI95-16]
MSGSGAGVEHRTASPDPESAPVTLLIADDDEVTRSGLRLLLAAQPGIAVVGEAADGVEAVEQARLLRPDVILMDVRMPRR
NGIEATRQLLAESDRPPKVVVITTFENDDYVTAALSAGASGFVLKRRPVPQIAEAVRVVAAGEAILFPTTLRRMVTARPL
ASTAALPRAALTGREEEVLRLMATGLSNPEIAGSLSVTLETVKTHVGNVLTKLGAQNRTHAVVIAYESGLVVPRFPG

Nucleotide


Download         Length: 714 bp        

>NTDB_id=283640 EES41_RS28365 WP_254211590.1 6353660..6354373(-) (vraR) [Streptomyces sp. ADI95-16]
ATGAGCGGCTCCGGCGCGGGCGTCGAGCACCGCACCGCCTCCCCCGACCCCGAATCCGCCCCCGTCACCCTGCTGATCGC
GGACGACGACGAGGTCACCCGCAGCGGTCTGCGCCTGCTGCTCGCGGCGCAGCCGGGGATCGCGGTCGTCGGGGAGGCCG
CCGACGGCGTCGAGGCGGTGGAGCAGGCCCGGCTGCTGCGGCCGGACGTGATCCTGATGGACGTACGGATGCCGCGCCGC
AACGGGATCGAGGCCACCCGGCAGTTGCTCGCGGAGTCGGACCGGCCGCCGAAGGTCGTGGTGATCACCACCTTCGAGAA
CGACGACTACGTCACCGCCGCGCTCAGCGCCGGGGCCAGCGGCTTCGTGCTCAAGCGGCGCCCCGTCCCGCAGATCGCGG
AGGCGGTGCGGGTGGTGGCGGCCGGGGAGGCGATCCTCTTCCCCACGACGCTGCGCCGGATGGTCACCGCCCGCCCGCTG
GCCTCCACCGCCGCGCTGCCGAGGGCGGCGCTGACGGGGCGTGAGGAGGAGGTGCTGCGGCTGATGGCCACGGGCCTGTC
GAACCCGGAGATCGCGGGGTCCCTCTCGGTGACCCTGGAGACGGTGAAGACCCACGTCGGGAACGTGCTCACCAAGCTCG
GCGCCCAGAACCGGACCCACGCGGTGGTGATCGCGTACGAGTCCGGCCTGGTGGTGCCGAGGTTCCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(170-225)

Response regulator receiver domain (Response_reg)

(25-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.18

89.03

0.376
  degU Bacillus subtilis subsp. subtilis str. 168

38.326

95.781

0.367