Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EES41_RS19820 Genome accession   NZ_CP033581
Coordinates   4468882..4469481 (+) Length   199 a.a.
NCBI ID   WP_123079718.1    Uniprot ID   -
Organism   Streptomyces sp. ADI95-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4463882..4474481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS19795 (EES41_19795) - 4464422..4465774 (+) 1353 WP_073797881.1 aspartate aminotransferase family protein -
  EES41_RS19800 (EES41_19800) - 4465872..4466540 (+) 669 WP_123079716.1 GntR family transcriptional regulator -
  EES41_RS19805 (EES41_19805) - 4466714..4467364 (+) 651 WP_073774224.1 hypothetical protein -
  EES41_RS19810 (EES41_19810) - 4467425..4468171 (-) 747 WP_174261705.1 SLATT domain-containing protein -
  EES41_RS19815 (EES41_19815) - 4468443..4468787 (+) 345 WP_008742462.1 YbaB/EbfC family nucleoid-associated protein -
  EES41_RS19820 (EES41_19820) recR 4468882..4469481 (+) 600 WP_123079718.1 recombination mediator RecR Machinery gene
  EES41_RS19825 (EES41_19825) - 4469474..4470142 (+) 669 WP_123079719.1 DUF5063 domain-containing protein -
  EES41_RS19830 (EES41_19830) - 4470267..4471541 (+) 1275 WP_123079720.1 aspartate kinase -
  EES41_RS19835 (EES41_19835) - 4471538..4472611 (+) 1074 WP_123079721.1 aspartate-semialdehyde dehydrogenase -
  EES41_RS19840 (EES41_19840) - 4472919..4473635 (+) 717 WP_123082579.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21859.29 Da        Isoelectric Point: 5.1721

>NTDB_id=283612 EES41_RS19820 WP_123079718.1 4468882..4469481(+) (recR) [Streptomyces sp. ADI95-16]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHALLEVKDKVRFCAVCGNVAQEERCAICRDPRRDTTV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGMVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=283612 EES41_RS19820 WP_123079718.1 4468882..4469481(+) (recR) [Streptomyces sp. ADI95-16]
TTGTACGAAGGCGTGGTCCAGGACCTGATCGACGAACTGGGCAGGCTGCCCGGCGTCGGGCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCCGAGCCCACCGACGTCCGCCGCCTCGCGCACGCGCTGCTTGAGGTGAAGGACAAGGTCC
GGTTCTGCGCGGTGTGCGGGAACGTGGCGCAGGAGGAGCGGTGCGCCATCTGCCGCGATCCGCGCCGCGACACGACGGTC
ATCTGTGTCGTGGAGGAGCCGAAGGACGTCGTCGCGATCGAGCGGACCCGCGAGTTCCGGGGCAAGTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGCGTCGGTCCGGACGACCTGCGCATCCGGGAGCTGCTGGCGCGGCTCGCGGACGGCA
TGGTCACCGAGCTGATCCTCGCGACCGACCCGAACCTGGAGGGCGAGGCGACCGCCACCTACCTCGCCCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCCGTCGGGGGAGATCTGGAGTACGCGGACGAGGTCACGCT
CGGGCGGGCCTTTGAAGGAAGGCGACTTCTCGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)

Toprim domain (Toprim_4)

(80-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

55.155

97.487

0.538
  recR Streptococcus pneumoniae R6

47.938

97.487

0.467