Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EES41_RS10020 Genome accession   NZ_CP033581
Coordinates   2317094..2317744 (-) Length   216 a.a.
NCBI ID   WP_123077382.1    Uniprot ID   -
Organism   Streptomyces sp. ADI95-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2312094..2322744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS09990 (EES41_10005) - 2312472..2313248 (-) 777 WP_174261666.1 sulfite exporter TauE/SafE family protein -
  EES41_RS09995 (EES41_10010) - 2313338..2314306 (-) 969 WP_008743861.1 SPFH domain-containing protein -
  EES41_RS10000 (EES41_10015) - 2314411..2314839 (-) 429 WP_008743862.1 NfeD family protein -
  EES41_RS10005 (EES41_10020) - 2314915..2315709 (-) 795 WP_008743863.1 ABC transporter ATP-binding protein -
  EES41_RS10010 (EES41_10025) - 2315855..2316637 (+) 783 WP_123077380.1 hypothetical protein -
  EES41_RS10015 (EES41_10030) - 2316706..2316942 (-) 237 WP_100583365.1 chaplin -
  EES41_RS10020 (EES41_10035) vraR 2317094..2317744 (-) 651 WP_123077382.1 response regulator transcription factor Regulator
  EES41_RS10025 (EES41_10040) - 2317737..2318867 (-) 1131 WP_123077384.1 GAF domain-containing sensor histidine kinase -
  EES41_RS10030 (EES41_10045) - 2319025..2319822 (+) 798 WP_123077386.1 SDR family oxidoreductase -
  EES41_RS10035 (EES41_10050) - 2319867..2320910 (+) 1044 WP_123082374.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
  EES41_RS10040 (EES41_10055) - 2321224..2321895 (+) 672 WP_123077388.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23515.73 Da        Isoelectric Point: 5.3656

>NTDB_id=283585 EES41_RS10020 WP_123077382.1 2317094..2317744(-) (vraR) [Streptomyces sp. ADI95-16]
MADTPGRVRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEASDGEEGIARAEELRPDVILMDIKMPGTDGIEALRRLRELAN
PARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAGAIRSVHAGHVLLQPEVAVALLTQDDQNPSSSRGGALTDRER
EVLSHIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGIGD

Nucleotide


Download         Length: 651 bp        

>NTDB_id=283585 EES41_RS10020 WP_123077382.1 2317094..2317744(-) (vraR) [Streptomyces sp. ADI95-16]
GTGGCTGACACACCCGGCAGGGTCCGCGTACTGCTCGTCGACGACCACCAGGTGGTCCGGCGCGGGCTGCGCACCTTCCT
GGAGGTGCAGGACGACATCGAGGTGGTCGGCGAGGCCTCGGACGGCGAGGAGGGCATCGCCCGCGCCGAGGAACTGCGGC
CCGACGTGATCCTGATGGACATCAAGATGCCGGGCACCGACGGCATCGAGGCGCTGCGGCGGCTGCGGGAGCTGGCGAAC
CCGGCGCGCGTGCTGATCGTCACCAGCTTCACCGAGCAGCGGACGGTGGTCCCCGCGCTGCGGGCCGGCGCCGCCGGCTA
CGTCTACAAGGACATCGACCCCGACGCCCTGGCCGGGGCCATCCGCTCGGTGCACGCGGGCCACGTCCTCCTCCAGCCGG
AGGTGGCGGTGGCCCTGCTCACGCAGGACGACCAGAATCCGTCGTCGAGCCGGGGCGGCGCGCTGACGGACCGCGAACGC
GAGGTGCTGTCGCACATAGCGGACGGGCGTTCGAACCGGGAGATCGCCCGGGCGCTGGTGCTGTCGGAGAAGACGGTGAA
GACGCACGTCTCGAACATCCTGATGAAGCTGGACGTGGCGGACCGCACCCAGGCGGCGCTGTGGGCCGTCCGGCACGGCA
TCGGGGACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-209)

Response regulator receiver domain (Response_reg)

(10-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.928

95.833

0.431
  degU Bacillus subtilis subsp. subtilis str. 168

40.09

100

0.412