Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EES41_RS04400 Genome accession   NZ_CP033581
Coordinates   1073761..1074393 (+) Length   210 a.a.
NCBI ID   WP_008742470.1    Uniprot ID   A0ABZ1RUP2
Organism   Streptomyces sp. ADI95-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1068761..1079393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS04380 (EES41_04450) - 1069664..1071214 (-) 1551 WP_123075818.1 PH domain-containing protein -
  EES41_RS04385 (EES41_04455) - 1071211..1071711 (-) 501 WP_123082252.1 PH domain-containing protein -
  EES41_RS04390 (EES41_04460) - 1071774..1072307 (-) 534 WP_123075820.1 hypothetical protein -
  EES41_RS04395 (EES41_04465) - 1072473..1073768 (+) 1296 WP_254211307.1 sensor histidine kinase -
  EES41_RS04400 (EES41_04470) vraR 1073761..1074393 (+) 633 WP_008742470.1 response regulator transcription factor Regulator
  EES41_RS04405 (EES41_04475) - 1074463..1077354 (-) 2892 WP_254211308.1 LuxR family transcriptional regulator -
  EES41_RS04410 (EES41_04480) - 1077568..1078332 (-) 765 WP_073776050.1 thioesterase II family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22543.02 Da        Isoelectric Point: 5.7971

>NTDB_id=283579 EES41_RS04400 WP_008742470.1 1073761..1074393(+) (vraR) [Streptomyces sp. ADI95-16]
MSEREPIGVLLADDHPVVREGLSAMLELDEGIRVVGQAGSGEEAVLQAGRLRPDIVLLDLRMGAMDGVAATGHILRESPR
SKVVIVTTYEDDADILRAVEAGAAGYLLKGSSREELVNAVKAAARGETVLTPSLAPKLFRARVVEAPVLSERECEVLQLV
RQGLTNADIGRRLFISEATVKTHLLRSFKKLSVSDRTAAVITALERGLLS

Nucleotide


Download         Length: 633 bp        

>NTDB_id=283579 EES41_RS04400 WP_008742470.1 1073761..1074393(+) (vraR) [Streptomyces sp. ADI95-16]
GTGAGTGAGCGCGAACCGATCGGGGTGCTGCTCGCCGATGACCATCCGGTGGTCCGGGAGGGCCTGAGCGCCATGCTGGA
GCTGGACGAGGGCATCCGGGTGGTGGGGCAGGCGGGTTCCGGTGAGGAGGCGGTGCTGCAGGCCGGCCGGCTGCGGCCCG
ACATCGTCCTGCTCGACCTGCGGATGGGCGCGATGGACGGGGTGGCCGCGACCGGGCACATCCTGCGGGAGTCGCCGCGG
AGCAAGGTGGTCATCGTGACCACGTACGAGGACGACGCCGACATCCTGCGCGCGGTGGAGGCCGGCGCGGCGGGCTATCT
GCTGAAGGGCAGTTCCCGCGAGGAGCTCGTGAACGCGGTGAAGGCGGCGGCGCGCGGTGAGACGGTGCTGACGCCGTCGC
TGGCGCCGAAGCTGTTCCGGGCCCGGGTGGTGGAGGCGCCGGTGCTGTCGGAGCGGGAGTGCGAGGTGTTGCAGCTGGTC
AGGCAGGGTCTGACCAACGCGGACATCGGGCGCCGGCTGTTCATCAGCGAGGCGACGGTCAAGACGCACCTGTTGCGGTC
GTTCAAGAAGCTGTCGGTGTCGGACCGCACGGCGGCCGTGATCACGGCGCTGGAGCGGGGCCTGCTGTCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(148-203)

Response regulator receiver domain (Response_reg)

(9-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

40.291

98.095

0.395
  degU Bacillus subtilis subsp. subtilis str. 168

34.978

100

0.371