Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   EES41_RS03540 Genome accession   NZ_CP033581
Coordinates   697839..698513 (+) Length   224 a.a.
NCBI ID   WP_123075571.1    Uniprot ID   -
Organism   Streptomyces sp. ADI95-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 692839..703513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS03520 (EES41_03445) - 693228..694583 (+) 1356 WP_073777666.1 carotenoid oxygenase family protein -
  EES41_RS03525 (EES41_03450) - 694713..695129 (+) 417 WP_123075567.1 YciI family protein -
  EES41_RS03530 (EES41_03455) - 695217..696473 (+) 1257 WP_123075569.1 RNA polymerase sigma factor -
  EES41_RS03535 (EES41_03460) - 696586..697842 (+) 1257 WP_216827239.1 sensor histidine kinase -
  EES41_RS03540 (EES41_03465) vraR 697839..698513 (+) 675 WP_123075571.1 response regulator transcription factor Regulator
  EES41_RS03545 (EES41_03470) - 698664..699887 (+) 1224 WP_164495734.1 alpha/beta hydrolase -
  EES41_RS03555 - 700047..700844 (-) 798 WP_123082227.1 VOC family protein -
  EES41_RS03560 (EES41_03480) - 700998..701396 (-) 399 WP_123075575.1 DUF4440 domain-containing protein -
  EES41_RS03565 (EES41_03485) - 701439..701840 (-) 402 WP_123082228.1 C40 family peptidase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24061.75 Da        Isoelectric Point: 5.0083

>NTDB_id=283578 EES41_RS03540 WP_123075571.1 697839..698513(+) (vraR) [Streptomyces sp. ADI95-16]
MTIRVMIADDQAMVREAFSILLGVQSDIEVVATAEDGSDAVAKAEELLPDVIVMDIRMPGVDGIEATRRITSRPGSGVKV
LVLTTFNLDEYVYEALRAGASGFLLKDASGLQLAEAVRVVARGEALLSPDLTKRLIAEFARIGGAEKPPTGVRIGKLTDR
ENEVLRRIAQGLSNAEIAERLVVAEETVKTHVGRILHKLQLRDRTQAAVLAWENGLVTPGASGL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=283578 EES41_RS03540 WP_123075571.1 697839..698513(+) (vraR) [Streptomyces sp. ADI95-16]
ATGACGATCCGCGTGATGATCGCCGACGACCAGGCCATGGTCCGCGAGGCGTTCTCCATCCTGCTCGGCGTCCAGAGCGA
CATCGAGGTCGTCGCGACGGCCGAGGACGGCAGCGACGCCGTGGCCAAGGCGGAGGAGCTGCTGCCCGACGTGATCGTGA
TGGACATCCGCATGCCCGGCGTCGACGGCATCGAGGCGACCCGCCGGATCACGTCCCGGCCCGGATCGGGCGTGAAGGTC
CTGGTGCTGACCACCTTCAACCTGGACGAGTACGTGTACGAGGCGCTGCGCGCCGGGGCCAGCGGGTTCCTCCTCAAGGA
CGCCTCGGGTCTCCAGCTGGCCGAGGCCGTCAGGGTGGTGGCCCGTGGGGAGGCGTTGCTGTCCCCCGACCTGACCAAGC
GGCTCATCGCGGAGTTCGCCCGGATCGGCGGGGCGGAAAAGCCGCCGACCGGGGTGCGGATCGGCAAACTGACCGACCGT
GAGAACGAGGTGCTCCGGCGGATCGCCCAGGGGCTGTCCAACGCGGAGATCGCCGAGCGGCTCGTCGTCGCCGAGGAGAC
GGTCAAGACGCACGTGGGCCGCATCCTGCACAAGCTGCAGCTGCGCGACCGTACCCAGGCGGCCGTCCTCGCCTGGGAGA
ACGGTCTCGTCACTCCTGGCGCCTCGGGGCTCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-117)

Bacterial regulatory proteins, luxR family (GerE)

(157-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.318

96.875

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

41.333

100

0.415