Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   EEL44_RS14905 Genome accession   NZ_CP033515
Coordinates   1800408..1801052 (-) Length   214 a.a.
NCBI ID   WP_001890391.1    Uniprot ID   Q9KSP3
Organism   Vibrio cholerae strain E4     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1795408..1806052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEL44_RS14865 (EEL44_14865) - 1795478..1795963 (+) 486 WP_001261948.1 GNAT family N-acetyltransferase -
  EEL44_RS14870 (EEL44_14870) - 1795960..1797078 (-) 1119 WP_001190450.1 GGDEF domain-containing protein -
  EEL44_RS14895 (EEL44_14895) pgsA 1797971..1798528 (-) 558 WP_001211977.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  EEL44_RS14900 (EEL44_14900) uvrC 1798576..1800408 (-) 1833 WP_000107095.1 excinuclease ABC subunit UvrC -
  EEL44_RS14905 (EEL44_14905) letA 1800408..1801052 (-) 645 WP_001890391.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  EEL44_RS14910 (EEL44_14910) - 1801428..1803791 (+) 2364 WP_000687840.1 DNA polymerase II -
  EEL44_RS14915 (EEL44_14915) - 1803763..1805862 (-) 2100 WP_000948258.1 EAL domain-containing protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 23751.50 Da        Isoelectric Point: 6.4970

>NTDB_id=283532 EEL44_RS14905 WP_001890391.1 1800408..1801052(-) (letA) [Vibrio cholerae strain E4]
MISVFLVDDHELVRTGIRRIIEDVRGMKVAGEADSGEEAVKWCRTNHADVILMDMNMPGIGGLEATKKLLRVNPDIKIIV
LTVHTENPFPTKVMQAGAAGYLTKGAAPDEMVNAIRIVHSGQRYISPEIAQQMALSQFSPASENPFADLSERELQIMLMI
TKGQKVTDISEQLSLSPKTVNSYRYRLFAKLNINGDVELTHLAIRHGILDTEKL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=283532 EEL44_RS14905 WP_001890391.1 1800408..1801052(-) (letA) [Vibrio cholerae strain E4]
TTGATTAGTGTTTTCCTTGTAGATGATCACGAGCTGGTTCGCACAGGGATACGACGTATTATTGAAGACGTCCGTGGAAT
GAAAGTAGCAGGGGAAGCTGACAGCGGTGAAGAAGCAGTAAAATGGTGCCGTACTAACCATGCGGATGTCATTTTAATGG
ATATGAACATGCCGGGTATTGGTGGCTTGGAAGCAACCAAGAAGCTGTTGCGTGTTAATCCGGACATTAAAATTATCGTA
TTGACGGTACATACCGAAAATCCGTTCCCAACCAAAGTGATGCAAGCGGGTGCCGCAGGTTATCTCACGAAGGGCGCGGC
ACCGGATGAAATGGTCAATGCGATCCGTATCGTTCACAGCGGTCAGCGTTACATTTCTCCAGAAATTGCGCAGCAAATGG
CGTTGAGTCAGTTTTCGCCCGCCTCTGAAAATCCTTTTGCTGATCTCTCCGAGCGTGAATTGCAGATCATGTTAATGATC
ACCAAAGGCCAGAAGGTGACGGACATTTCCGAACAGCTCAGTTTGAGCCCGAAAACCGTCAACAGCTACCGCTACCGTTT
GTTCGCCAAGCTGAATATCAACGGTGATGTGGAATTAACCCACTTAGCTATCCGACACGGGATCTTAGATACTGAGAAGT
TATAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-203)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KSP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.905

98.131

0.509
  letA Legionella pneumophila strain ERS1305867

51.905

98.131

0.509