Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D8668_RS29505 Genome accession   NZ_CP033439
Coordinates   6255964..6256638 (-) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain SP4528     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6250964..6261638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8668_RS29475 (D8668_29475) - 6251386..6252720 (+) 1335 WP_033991420.1 aspartate aminotransferase family protein -
  D8668_RS29480 (D8668_29480) - 6252786..6253148 (+) 363 WP_003096551.1 cupin domain-containing protein -
  D8668_RS29485 (D8668_29485) rpmG 6253285..6253440 (-) 156 WP_003096555.1 50S ribosomal protein L33 -
  D8668_RS29490 (D8668_29490) rpmB 6253452..6253688 (-) 237 WP_003096556.1 50S ribosomal protein L28 -
  D8668_RS29495 (D8668_29495) - 6254044..6255624 (+) 1581 WP_023100059.1 ABC transporter substrate-binding protein -
  D8668_RS29505 (D8668_29505) radC 6255964..6256638 (-) 675 WP_003096559.1 DNA repair protein RadC Machinery gene
  D8668_RS29510 (D8668_29510) coaBC 6256778..6257986 (+) 1209 WP_003098292.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  D8668_RS29515 (D8668_29515) dut 6257994..6258449 (+) 456 WP_003096567.1 dUTP diphosphatase -
  D8668_RS29520 (D8668_29520) - 6258486..6261098 (+) 2613 WP_033991423.1 phosphomannomutase/phosphoglucomutase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=283476 D8668_RS29505 WP_003096559.1 6255964..6256638(-) (radC) [Pseudomonas aeruginosa strain SP4528]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=283476 D8668_RS29505 WP_003096559.1 6255964..6256638(-) (radC) [Pseudomonas aeruginosa strain SP4528]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGCAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGTTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCTTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACCGCGCGCCTGAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCTCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397