Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   D8668_RS21355 Genome accession   NZ_CP033439
Coordinates   4564109..4564438 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SP4528     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4559109..4569438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8668_RS21340 (D8668_21340) uvrB 4560496..4562508 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  D8668_RS21345 (D8668_21345) - 4562696..4563892 (+) 1197 WP_003104588.1 amino acid aminotransferase -
  D8668_RS21355 (D8668_21355) comEA/comE1 4564109..4564438 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  D8668_RS21360 (D8668_21360) - 4564629..4566626 (-) 1998 WP_021265047.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  D8668_RS21365 (D8668_21365) - 4566639..4567664 (-) 1026 WP_023093916.1 glycosyltransferase family 4 protein -
  D8668_RS21370 (D8668_21370) - 4567765..4568706 (-) 942 WP_099319968.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=283455 D8668_RS21355 WP_003091430.1 4564109..4564438(-) (comEA/comE1) [Pseudomonas aeruginosa strain SP4528]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=283455 D8668_RS21355 WP_003091430.1 4564109..4564438(-) (comEA/comE1) [Pseudomonas aeruginosa strain SP4528]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGATG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAGGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385