Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C7M30_RS13675 Genome accession   NZ_CP028218
Coordinates   2656351..2657073 (+) Length   240 a.a.
NCBI ID   WP_033884179.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102756     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2651351..2662073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS13650 (C7M30_02714) degS 2651662..2652819 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M30_RS13655 (C7M30_02715) degU 2652902..2653591 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M30_RS13660 (C7M30_02716) fakBA 2653689..2654534 (+) 846 WP_003227986.1 DegV family protein -
  C7M30_RS13665 (C7M30_02717) comFA 2654640..2656031 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  C7M30_RS13670 (C7M30_02718) comFB 2656091..2656387 (+) 297 WP_014478130.1 late competence protein ComFB -
  C7M30_RS13675 (C7M30_02719) comFC 2656351..2657073 (+) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  C7M30_RS13680 (C7M30_02720) yvyF 2657146..2657565 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M30_RS13685 (C7M30_02721) flgM 2657646..2657912 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M30_RS13690 (C7M30_02722) flgN 2657928..2658410 (+) 483 WP_003227999.1 flagellar protein FlgN -
  C7M30_RS13695 (C7M30_02723) flgK 2658429..2659952 (+) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  C7M30_RS13700 (C7M30_02724) flgL 2659963..2660859 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  C7M30_RS13705 (C7M30_02725) yviE 2660906..2661481 (+) 576 WP_015384781.1 DUF6470 family protein -
  C7M30_RS13710 (C7M30_02726) fliW 2661502..2661933 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27544.83 Da        Isoelectric Point: 9.3157

>NTDB_id=283437 C7M30_RS13675 WP_033884179.1 2656351..2657073(+) (comFC) [Bacillus subtilis strain SRCM102756]
MSHEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=283437 C7M30_RS13675 WP_033884179.1 2656351..2657073(+) (comFC) [Bacillus subtilis strain SRCM102756]
ATGTCACACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAGAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

98.75

100

0.988

Multiple sequence alignment