Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C7M30_RS13655 Genome accession   NZ_CP028218
Coordinates   2652902..2653591 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM102756     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2647902..2658591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS13635 (C7M30_02711) tagO 2648468..2649544 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  C7M30_RS13640 (C7M30_02712) tagV 2649617..2650792 (-) 1176 WP_072173456.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C7M30_RS13645 (C7M30_02713) yvyE 2650792..2651445 (-) 654 WP_003227979.1 YigZ family protein -
  C7M30_RS13650 (C7M30_02714) degS 2651662..2652819 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M30_RS13655 (C7M30_02715) degU 2652902..2653591 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M30_RS13660 (C7M30_02716) fakBA 2653689..2654534 (+) 846 WP_003227986.1 DegV family protein -
  C7M30_RS13665 (C7M30_02717) comFA 2654640..2656031 (+) 1392 WP_014481052.1 ATP-dependent helicase ComFA Machinery gene
  C7M30_RS13670 (C7M30_02718) comFB 2656091..2656387 (+) 297 WP_014478130.1 late competence protein ComFB -
  C7M30_RS13675 (C7M30_02719) comFC 2656351..2657073 (+) 723 WP_033884179.1 comF operon protein ComFC Machinery gene
  C7M30_RS13680 (C7M30_02720) yvyF 2657146..2657565 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M30_RS13685 (C7M30_02721) flgM 2657646..2657912 (+) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M30_RS13690 (C7M30_02722) flgN 2657928..2658410 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=283435 C7M30_RS13655 WP_003219701.1 2652902..2653591(+) (degU) [Bacillus subtilis strain SRCM102756]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=283435 C7M30_RS13655 WP_003219701.1 2652902..2653591(+) (degU) [Bacillus subtilis strain SRCM102756]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTTCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGTTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment