Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C7M29_RS17090 Genome accession   NZ_CP028217
Coordinates   3343077..3343970 (-) Length   297 a.a.
NCBI ID   WP_106073909.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3338077..3348970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS17075 (C7M29_03355) xerC 3338449..3339363 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  C7M29_RS17080 (C7M29_03356) trmFO 3339431..3340738 (-) 1308 WP_161476996.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C7M29_RS17085 (C7M29_03357) topA 3340814..3342889 (-) 2076 WP_003245599.1 type I DNA topoisomerase -
  C7M29_RS17090 (C7M29_03358) dprA 3343077..3343970 (-) 894 WP_106073909.1 DNA-processing protein DprA Machinery gene
  C7M29_RS17095 (C7M29_03359) sucD 3344031..3344933 (-) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  C7M29_RS17100 (C7M29_03360) sucC 3344962..3346119 (-) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  C7M29_RS17105 (C7M29_03361) ylqH 3346292..3346573 (-) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  C7M29_RS17110 (C7M29_03362) - 3346570..3348300 (-) 1731 WP_032721552.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32849.17 Da        Isoelectric Point: 10.0054

>NTDB_id=283369 C7M29_RS17090 WP_106073909.1 3343077..3343970(-) (dprA) [Bacillus subtilis strain SRCM102751]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKAICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=283369 C7M29_RS17090 WP_106073909.1 3343077..3343970(-) (dprA) [Bacillus subtilis strain SRCM102751]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGCGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCACTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGCGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

99.327

100

0.993
  dprA Legionella pneumophila strain ERS1305867

38.127

100

0.384
  dprA Lactococcus lactis subsp. cremoris KW2

41.729

89.562

0.374

Multiple sequence alignment