Detailed information NTG0283253

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EB670_RS05240
• Genome accession: NZ_CP033378
• Coordinates: 1069163..1070155 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain L73
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1064163..1075155

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EB670_RS05210 (EB670_05210)	ispD	1064224..1064934 (+)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EB670_RS05215 (EB670_05215)	ispF	1064934..1065413 (+)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EB670_RS05220 (EB670_05220)	truD	1065410..1066459 (+)	1050	WP_000568946.1	tRNA pseudouridine(13) synthase TruD	-
EB670_RS05225 (EB670_05225)	surE	1066440..1067201 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EB670_RS05230 (EB670_05230)	pcm	1067195..1067821 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EB670_RS05235 (EB670_05235)	nlpD	1068006..1069100 (+)	1095	WP_349813515.1	murein hydrolase activator NlpD	-
EB670_RS05240 (EB670_05240)	rpoS	1069163..1070155 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EB670_RS05245 (EB670_05245)	ygbN	1070249..1071613 (-)	1365	WP_000104441.1	GntP family transporter	-
EB670_RS05250 (EB670_05250)	ygbM	1071702..1072478 (-)	777	WP_001136934.1	HPr family phosphocarrier protein	-
EB670_RS05255 (EB670_05255)	ygbL	1072483..1073121 (-)	639	WP_001278994.1	aldolase	-
EB670_RS05260 (EB670_05260)	otnK	1073118..1074380 (-)	1263	WP_000590403.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=283253 EB670_RS05240 WP_000081550.1 1069163..1070155(+) (rpoS) [Escherichia coli strain L73]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=283253 EB670_RS05240 WP_000081550.1 1069163..1070155(+) (rpoS) [Escherichia coli strain L73]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715