Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C7M28_RS06740 Genome accession   NZ_CP028215
Coordinates   1268351..1268995 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102750     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1263351..1273995
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M28_RS06705 (C7M28_01321) mrpB 1264541..1264972 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  C7M28_RS06710 (C7M28_01322) mrpC 1264972..1265313 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C7M28_RS06715 (C7M28_01323) mrpD 1265306..1266787 (+) 1482 WP_046381299.1 Na+/H+ antiporter subunit D -
  C7M28_RS06720 (C7M28_01324) mrpE 1266793..1267269 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  C7M28_RS06725 (C7M28_01325) mrpF 1267269..1267553 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C7M28_RS06730 (C7M28_01326) mnhG 1267537..1267911 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  C7M28_RS06735 (C7M28_01327) yuxO 1267952..1268332 (-) 381 WP_014477831.1 hotdog fold thioesterase -
  C7M28_RS06740 (C7M28_01328) comA 1268351..1268995 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C7M28_RS06745 (C7M28_01329) comP 1269076..1271388 (-) 2313 WP_041332996.1 sensor histidine kinase Regulator
  C7M28_RS06750 (C7M28_01330) comX 1271404..1271625 (-) 222 WP_014480704.1 competence pheromone ComX -
  C7M28_RS06755 (C7M28_01331) - 1271627..1272490 (-) 864 WP_014480705.1 polyprenyl synthetase family protein -
  C7M28_RS06760 (C7M28_01332) degQ 1272675..1272815 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C7M28_RS06765 (C7M28_01333) - 1273037..1273162 (+) 126 WP_003228793.1 hypothetical protein -
  C7M28_RS06770 (C7M28_01334) - 1273277..1273645 (+) 369 WP_046381300.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=283251 C7M28_RS06740 WP_003220716.1 1268351..1268995(-) (comA) [Bacillus subtilis strain SRCM102750]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=283251 C7M28_RS06740 WP_003220716.1 1268351..1268995(-) (comA) [Bacillus subtilis strain SRCM102750]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment