Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   C7M28_RS03225 Genome accession   NZ_CP028215
Coordinates   605615..605950 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SRCM102750     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 600615..610950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M28_RS03205 (C7M28_00636) gcvT 601208..602296 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  C7M28_RS03210 (C7M28_00637) hepAA 602737..604410 (+) 1674 WP_029726726.1 SNF2-related protein -
  C7M28_RS03215 (C7M28_00638) yqhG 604431..605225 (+) 795 WP_015714249.1 YqhG family protein -
  C7M28_RS03220 (C7M28_00639) sinI 605408..605581 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  C7M28_RS03225 (C7M28_00640) sinR 605615..605950 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  C7M28_RS03230 (C7M28_00641) tasA 606043..606828 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  C7M28_RS03235 (C7M28_00642) sipW 606892..607464 (-) 573 WP_003230181.1 signal peptidase I SipW -
  C7M28_RS03240 (C7M28_00643) tapA 607448..608209 (-) 762 WP_003230180.1 amyloid fiber anchoring/assembly protein TapA -
  C7M28_RS03245 (C7M28_00644) yqzG 608481..608807 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  C7M28_RS03250 (C7M28_00645) spoIITA 608849..609028 (-) 180 WP_029726723.1 YqzE family protein -
  C7M28_RS03255 (C7M28_00646) comGG 609100..609474 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  C7M28_RS03260 comGF 609475..609858 (-) 384 WP_046160582.1 ComG operon protein ComGF Machinery gene
  C7M28_RS03265 (C7M28_00648) comGE 609884..610231 (-) 348 WP_046381178.1 ComG operon protein 5 Machinery gene
  C7M28_RS03270 (C7M28_00649) comGD 610215..610646 (-) 432 WP_046381179.1 comG operon protein ComGD Machinery gene
  C7M28_RS03275 (C7M28_00650) comGC 610636..610932 (-) 297 WP_014477332.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=283230 C7M28_RS03225 WP_003226345.1 605615..605950(+) (sinR) [Bacillus subtilis strain SRCM102750]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=283230 C7M28_RS03225 WP_003226345.1 605615..605950(+) (sinR) [Bacillus subtilis strain SRCM102750]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment