Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapF   Type   Regulator
Locus tag   C7M27_RS20975 Genome accession   NZ_CP028213
Coordinates   4050377..4051522 (-) Length   381 a.a.
NCBI ID   WP_029318693.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 4045377..4056522
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS20940 (C7M27_04140) - 4045936..4046496 (-) 561 WP_128740811.1 hypothetical protein -
  C7M27_RS20945 (C7M27_04141) - 4046489..4047136 (-) 648 WP_015714896.1 ABC transporter ATP-binding protein -
  C7M27_RS20950 (C7M27_04142) - 4047139..4047930 (-) 792 WP_250635645.1 hypothetical protein -
  C7M27_RS20955 (C7M27_04143) - 4047946..4048620 (-) 675 WP_021480844.1 hypothetical protein -
  C7M27_RS20960 (C7M27_04144) - 4048607..4049395 (-) 789 WP_015714893.1 membrane protein -
  C7M27_RS20965 (C7M27_04145) - 4049544..4050023 (-) 480 WP_015714892.1 hypothetical protein -
  C7M27_RS20970 (C7M27_04146) phrF 4050274..4050393 (-) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  C7M27_RS20975 (C7M27_04147) rapF 4050377..4051522 (-) 1146 WP_029318693.1 response regulator aspartate phosphatase RapF Regulator
  C7M27_RS22240 - 4051525..4051755 (+) 231 Protein_4116 hypothetical protein -
  C7M27_RS20985 (C7M27_04148) ywhK 4051752..4053107 (+) 1356 WP_015250986.1 YncE family protein -
  C7M27_RS20990 (C7M27_04149) ywhL 4053146..4054522 (+) 1377 WP_128740810.1 YncE family protein -
  C7M27_RS20995 (C7M27_04150) albG 4054528..4055229 (-) 702 WP_128740809.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  C7M27_RS21000 (C7M27_04151) albF 4055226..4056506 (-) 1281 WP_128740808.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 45594.05 Da        Isoelectric Point: 5.0624

>NTDB_id=283221 C7M27_RS20975 WP_029318693.1 4050377..4051522(-) (rapF) [Bacillus subtilis strain SRCM102749]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKENEAYNIRLLQCHSLFATNFLDLKQYEDAVSHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AITYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKMDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=283221 C7M27_RS20975 WP_029318693.1 4050377..4051522(-) (rapF) [Bacillus subtilis strain SRCM102749]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTTAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTAATGGAGTTTCGGCACAACCTGATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTATGAGCTGGATCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAAAATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCGTCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGAAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATAACTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATGGATAAAGCTCATGAATACCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCCTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(4-65)

Tetratricopeptide repeat (TPR_12)

(223-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapF Bacillus subtilis subsp. subtilis str. 168

98.95

100

0.99
  rapC Bacillus subtilis subsp. subtilis str. 168

57.368

99.738

0.572

Multiple sequence alignment