Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   C7M27_RS12875 Genome accession   NZ_CP028213
Coordinates   2471382..2472503 (-) Length   373 a.a.
NCBI ID   WP_250634842.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   homologous recombination; DNA uptake (predicted from homology)   
Homologous recombination DNA binding and uptake

Genomic Context


Location: 2466382..2477503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS12850 (C7M27_02540) cwlQ 2466520..2467254 (+) 735 WP_250620093.1 bifunctional muramidase/murein lytic transglycosylase -
  C7M27_RS12855 (C7M27_02541) bhbI 2467509..2467907 (+) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  C7M27_RS12860 (C7M27_02542) spxH 2467904..2468803 (+) 900 WP_003245184.1 protease adaptor protein SpxH -
  C7M27_RS12865 (C7M27_02543) - 2469118..2469285 (+) 168 WP_003244944.1 hypothetical protein -
  C7M27_RS12870 (C7M27_02544) pepF 2469323..2471152 (-) 1830 WP_201755714.1 oligoendopeptidase F -
  C7M27_RS12875 (C7M27_02545) coiA 2471382..2472503 (-) 1122 WP_250634842.1 competence protein CoiA Machinery gene
  C7M27_RS12880 - 2472577..2472699 (+) 123 WP_003245684.1 hypothetical protein -
  C7M27_RS12885 (C7M27_02546) mecA 2472694..2473350 (-) 657 WP_003232942.1 adaptor protein MecA Regulator
  C7M27_RS12890 - 2473317..2473457 (-) 141 WP_119122854.1 hypothetical protein -
  C7M27_RS12895 (C7M27_02547) yjbE 2473627..2474283 (+) 657 WP_128740217.1 TerC family protein -
  C7M27_RS12900 (C7M27_02548) spx 2474329..2474724 (-) 396 WP_014476435.1 transcriptional regulator Spx -
  C7M27_RS12905 (C7M27_02549) yjbC 2474905..2475483 (-) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  C7M27_RS12910 (C7M27_02550) yjbB 2475647..2476864 (-) 1218 WP_128740216.1 MFS transporter -

Sequence


Protein


Download         Length: 373 a.a.        Molecular weight: 43852.88 Da        Isoelectric Point: 10.0622

>NTDB_id=283191 C7M27_RS12875 WP_250634842.1 2471382..2472503(-) (coiA) [Bacillus subtilis strain SRCM102749]
MFHLLGAQQNQKLKRRRFFCPVCGGELAVKLGLQKAPHFAHKQNKSCSIDIEPESAYHLEGKRQLYVWLKTQRASPILEP
YIRTINQRPDVMARIKEHMLAVEYQCANIAPDVFQKRTEGFKQEGIIPQWIMGYSRLKRTASSFYQLSAFHWQFINASPY
RELICYCPERRSFLRLSHIIPFYTNHSYSSVQTIPIHRAGAGDLFFTEPKPSFQYSGWTKAIHRFRHKPHRFNSKEINRL
RLLFYEKRQTPFSFLPTEVFVPVRKGAVFKSPVFVWQGFLYLFMTDLGDKRAPIRFSAVLQQCKLHIHNKNIALRFECSE
ECLSEAVKQYIDFLCKKGFLRETQKEVYVLNQPAGGIHSMQDLIERDRSCFIE

Nucleotide


Download         Length: 1122 bp        

>NTDB_id=283191 C7M27_RS12875 WP_250634842.1 2471382..2472503(-) (coiA) [Bacillus subtilis strain SRCM102749]
CTGTTTCACCTTCTAGGCGCTCAGCAAAACCAGAAATTAAAGCGGAGACGGTTCTTCTGTCCGGTATGCGGGGGAGAGCT
AGCTGTGAAGCTCGGACTTCAAAAAGCGCCGCATTTTGCCCATAAACAGAACAAGTCCTGCTCCATAGACATCGAACCGG
AAAGCGCCTACCACTTAGAAGGAAAAAGACAGCTGTATGTATGGCTGAAAACACAACGGGCTTCACCAATATTGGAGCCG
TATATAAGGACAATCAACCAAAGACCGGACGTCATGGCAAGGATCAAGGAGCATATGCTTGCTGTTGAATATCAATGCGC
CAATATCGCTCCAGATGTCTTTCAAAAGCGGACAGAGGGCTTCAAACAAGAAGGAATCATCCCGCAGTGGATTATGGGAT
ACAGCCGCTTAAAACGGACTGCTTCGTCCTTTTATCAGCTTTCAGCCTTTCATTGGCAGTTTATCAATGCAAGTCCATAC
AGAGAGCTGATATGTTATTGTCCTGAAAGGCGTTCTTTTCTCCGGCTCAGCCACATCATTCCATTCTACACAAACCATTC
TTATTCCTCAGTCCAAACGATCCCTATCCATCGGGCAGGTGCAGGCGATCTTTTTTTCACTGAACCGAAACCCTCATTTC
AATATTCAGGCTGGACGAAAGCGATTCACCGTTTTCGCCATAAACCCCATCGGTTTAACTCAAAGGAAATAAATCGCCTT
AGGCTGCTGTTTTATGAGAAGCGGCAGACGCCTTTTTCTTTTCTGCCGACTGAAGTGTTTGTTCCTGTTAGAAAAGGGGC
AGTTTTTAAGAGTCCGGTTTTTGTGTGGCAGGGGTTTCTTTATTTGTTTATGACGGATCTTGGAGATAAACGTGCGCCAA
TTCGTTTTTCAGCCGTTTTGCAGCAGTGCAAACTGCACATTCATAATAAGAACATTGCACTCAGGTTCGAATGCAGCGAA
GAGTGTCTTTCAGAAGCGGTTAAACAGTATATTGATTTTTTGTGCAAGAAGGGATTTTTAAGGGAGACTCAGAAAGAAGT
ATATGTGCTGAATCAGCCTGCAGGCGGCATACACTCCATGCAGGATCTCATAGAAAGAGACCGCAGCTGTTTTATAGAAT
GA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Bacillus subtilis subsp. subtilis str. 168

98.123

100

0.981


Multiple sequence alignment