Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C7M27_RS05935 Genome accession   NZ_CP028213
Coordinates   1149132..1149935 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1144132..1154935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS05915 (C7M27_01166) yqxC 1144244..1145089 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  C7M27_RS05920 (C7M27_01167) argR 1145187..1145636 (+) 450 WP_015384067.1 arginine repressor ArgR -
  C7M27_RS05925 (C7M27_01168) recN 1145671..1147401 (+) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  C7M27_RS05930 (C7M27_01169) spoIVB 1147576..1148856 (+) 1281 WP_021480004.1 SpoIVB peptidase -
  C7M27_RS05935 (C7M27_01170) spo0A 1149132..1149935 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  C7M27_RS05940 (C7M27_01172) yqiG 1150400..1151518 (-) 1119 WP_128740568.1 NADH-dependent flavin oxidoreductase -
  C7M27_RS05945 - 1151591..1151743 (-) 153 WP_014480226.1 hypothetical protein -
  C7M27_RS05950 (C7M27_01173) yqiH 1152051..1152344 (+) 294 WP_003230284.1 lipoprotein -
  C7M27_RS05955 (C7M27_01174) yqiI 1152359..1152979 (+) 621 WP_010886565.1 N-acetylmuramoyl-L-alanine amidase -
  C7M27_RS05960 (C7M27_01175) glpQB 1153058..1153789 (+) 732 WP_049141221.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=283179 C7M27_RS05935 WP_003226427.1 1149132..1149935(+) (spo0A) [Bacillus subtilis strain SRCM102749]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=283179 C7M27_RS05935 WP_003226427.1 1149132..1149935(+) (spo0A) [Bacillus subtilis strain SRCM102749]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTTAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment