Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   C7M27_RS05925 Genome accession   NZ_CP028213
Coordinates   1145671..1147401 (+) Length   576 a.a.
NCBI ID   WP_038829742.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1140671..1152401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS05900 (C7M27_01163) xseB 1141037..1141291 (+) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -
  C7M27_RS05905 (C7M27_01164) ispA 1141281..1142171 (+) 891 WP_003230262.1 polyprenyl synthetase family protein -
  C7M27_RS05910 (C7M27_01165) dxs 1142346..1144247 (+) 1902 WP_128740569.1 1-deoxy-D-xylulose-5-phosphate synthase -
  C7M27_RS05915 (C7M27_01166) yqxC 1144244..1145089 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  C7M27_RS05920 (C7M27_01167) argR 1145187..1145636 (+) 450 WP_015384067.1 arginine repressor ArgR -
  C7M27_RS05925 (C7M27_01168) recN 1145671..1147401 (+) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  C7M27_RS05930 (C7M27_01169) spoIVB 1147576..1148856 (+) 1281 WP_021480004.1 SpoIVB peptidase -
  C7M27_RS05935 (C7M27_01170) spo0A 1149132..1149935 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  C7M27_RS05940 (C7M27_01172) yqiG 1150400..1151518 (-) 1119 WP_128740568.1 NADH-dependent flavin oxidoreductase -
  C7M27_RS05945 - 1151591..1151743 (-) 153 WP_014480226.1 hypothetical protein -
  C7M27_RS05950 (C7M27_01173) yqiH 1152051..1152344 (+) 294 WP_003230284.1 lipoprotein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64522.38 Da        Isoelectric Point: 4.7697

>NTDB_id=283178 C7M27_RS05925 WP_038829742.1 1145671..1147401(+) (recN) [Bacillus subtilis strain SRCM102749]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALK
TYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLELNEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEFDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKV
RTASRNEEAPLVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKVAEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=283178 C7M27_RS05925 WP_038829742.1 1145671..1147401(+) (recN) [Bacillus subtilis strain SRCM102749]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATTATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGGGAAGCAAAAGCCGAACTTGAAGGGCTGTTTCTGTTGGAGAGCGGCCATCCTGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGGGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCTTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGACAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTTTTGGACAAGTTTGCCGGGGCCGAAGTGGAAAGCGCGCTCAAA
ACGTATCAGGAAGGATACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGCCTTGATCTTATTCAATTTCAGCTCGAAGAAATCGAATCGGCAAAGCTTGAGCTTAACGAAGATGAACAGCTCC
AAGAAGAGCGCCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAACGCGCTTCGCAGTGAG
CAGGGCGGATTGGACTGGGTCGGAATGGCATCAGCGCAGCTTGAAGATATATCTGATATTAACGAACCGCTAAAAAAACT
GTCTGAAAGTGTTTCGAACTCCTACTATTTGCTTGAGGATGCCACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
TTGATCCGGAACGCCTGAACTATATTGAGACGCGACTTAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTT
GAAGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAGATTGACCAAATTGAAAACAGGGACAGCCACCTTCAAAGCTT
GAAAAAGGAGCTTGACTCCGTCGGCAAAGATGTCGCAGTGGAAGCGGCAAATGTGTCACAAATCCGAAAAACATGGGCGA
AAAAGCTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACTTTTGATACGGAATTTAAGGTC
AGAACAGCGTCACGCAATGAAGAGGCGCCGCTTGTAAACGGCCAGCCCGTTCAGCTGACTGAACAAGGGATTGACCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCCCTTTCAAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAACAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGCAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAGGTGTCAATAGGTTCACAAGTGCTGTGCATTACACACCT
GCCTCAGGTGGCTGCCATGGCAGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTCTCTAAGCAGGAAAAGGTAGCGGAAATCGGACGCATGATTGCAGGTGTCGAAGTAACCGACTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

99.653

100

0.997

Multiple sequence alignment