Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C7M27_RS02310 Genome accession   NZ_CP028213
Coordinates   472453..473097 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 467453..478097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS02280 (C7M27_00454) - 467870..468238 (-) 369 WP_116315920.1 hypothetical protein -
  C7M27_RS02285 - 468352..468477 (-) 126 WP_003228793.1 hypothetical protein -
  C7M27_RS02290 (C7M27_00455) degQ 468699..468839 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C7M27_RS02295 (C7M27_00456) - 469023..469883 (+) 861 WP_128740688.1 polyprenyl synthetase family protein -
  C7M27_RS02300 (C7M27_00457) comX 469896..470060 (+) 165 WP_015384519.1 competence pheromone ComX -
  C7M27_RS02305 (C7M27_00458) comP 470072..472372 (+) 2301 WP_088300729.1 histidine kinase Regulator
  C7M27_RS02310 (C7M27_00459) comA 472453..473097 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C7M27_RS02315 (C7M27_00460) yuxO 473116..473496 (+) 381 WP_003228810.1 hotdog fold thioesterase -
  C7M27_RS02320 (C7M27_00461) mnhG 473535..473909 (-) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  C7M27_RS02325 (C7M27_00462) mrpF 473893..474177 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C7M27_RS02330 (C7M27_00463) mrpE 474177..474653 (-) 477 WP_128740687.1 Na+/H+ antiporter subunit E -
  C7M27_RS02335 (C7M27_00464) mrpD 474659..476140 (-) 1482 WP_043940184.1 Na+/H+ antiporter subunit D -
  C7M27_RS02340 (C7M27_00465) mrpC 476133..476474 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C7M27_RS02345 (C7M27_00466) mrpB 476474..476905 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=283155 C7M27_RS02310 WP_003220716.1 472453..473097(+) (comA) [Bacillus subtilis strain SRCM102749]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=283155 C7M27_RS02310 WP_003220716.1 472453..473097(+) (comA) [Bacillus subtilis strain SRCM102749]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment