Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C7M25_RS09235 Genome accession   NZ_CP028211
Coordinates   1830130..1830774 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain SRCM102747     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1825130..1835774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M25_RS09210 (C7M25_01849) - 1825573..1825914 (-) 342 WP_069006914.1 hypothetical protein -
  C7M25_RS09215 (C7M25_01850) degQ 1826379..1826519 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  C7M25_RS09220 (C7M25_01851) - 1826671..1827582 (+) 912 WP_081111611.1 polyprenyl synthetase family protein -
  C7M25_RS09225 (C7M25_01852) comX 1827582..1827746 (+) 165 WP_061581461.1 competence pheromone ComX -
  C7M25_RS09230 (C7M25_01853) comP 1827758..1830049 (+) 2292 WP_160223246.1 histidine kinase Regulator
  C7M25_RS09235 (C7M25_01854) comA 1830130..1830774 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  C7M25_RS09240 (C7M25_01855) - 1830796..1831179 (+) 384 WP_012118312.1 hotdog fold thioesterase -
  C7M25_RS09245 (C7M25_01856) mnhG 1831219..1831593 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  C7M25_RS09250 (C7M25_01857) - 1831577..1831861 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  C7M25_RS09255 (C7M25_01858) - 1831861..1832337 (-) 477 WP_160223245.1 Na+/H+ antiporter subunit E -
  C7M25_RS09260 (C7M25_01859) - 1832343..1833824 (-) 1482 WP_080130026.1 Na+/H+ antiporter subunit D -
  C7M25_RS09265 (C7M25_01860) - 1833817..1834158 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  C7M25_RS09270 (C7M25_01861) - 1834158..1834589 (-) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=283021 C7M25_RS09235 WP_003152052.1 1830130..1830774(+) (comA) [Bacillus velezensis strain SRCM102747]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=283021 C7M25_RS09235 WP_003152052.1 1830130..1830774(+) (comA) [Bacillus velezensis strain SRCM102747]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGACAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment