Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C7M25_RS07280 Genome accession   NZ_CP028211
Coordinates   1442841..1444226 (+) Length   461 a.a.
NCBI ID   WP_160223300.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102747     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1437841..1449226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M25_RS07260 (C7M25_01458) - 1438987..1439634 (-) 648 WP_061581228.1 YigZ family protein -
  C7M25_RS07265 (C7M25_01459) degS 1439857..1441020 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C7M25_RS07270 (C7M25_01460) degU 1441097..1441786 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M25_RS07275 (C7M25_01461) - 1441884..1442732 (+) 849 WP_003151387.1 DegV family protein -
  C7M25_RS07280 (C7M25_01462) comFA 1442841..1444226 (+) 1386 WP_160223300.1 DEAD/DEAH box helicase Machinery gene
  C7M25_RS07285 (C7M25_01463) - 1444284..1444568 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  C7M25_RS07290 comFC 1444574..1445263 (+) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  C7M25_RS07295 (C7M25_01465) - 1445337..1445756 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  C7M25_RS07300 (C7M25_01466) flgM 1445826..1446092 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M25_RS07305 (C7M25_01467) - 1446107..1446589 (+) 483 WP_003151394.1 flagellar protein FlgN -
  C7M25_RS07310 (C7M25_01468) flgK 1446605..1448122 (+) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  C7M25_RS07315 (C7M25_01469) flgL 1448134..1449051 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52690.00 Da        Isoelectric Point: 10.2276

>NTDB_id=283015 C7M25_RS07280 WP_160223300.1 1442841..1444226(+) (comFA) [Bacillus velezensis strain SRCM102747]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFIEKEYITDEPSIIRRKNRYVCQRCGQSDQASFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWEPVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTSLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEANLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNVRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=283015 C7M25_RS07280 WP_160223300.1 1442841..1444226(+) (comFA) [Bacillus velezensis strain SRCM102747]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTACGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGATCAGCGCATCAAGCGTTTTATAGAAAAAGAATATATAACGGACGAGCCGTCAATCATCCGCCGGAAAAACCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCAGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAACCTGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCTCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACTTCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCAATTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACGGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACATGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAATGTAAGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

61.957

99.783

0.618

Multiple sequence alignment