Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C7M25_RS07270 Genome accession   NZ_CP028211
Coordinates   1441097..1441786 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SRCM102747     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1436097..1446786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M25_RS07250 (C7M25_01456) - 1436587..1437663 (+) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  C7M25_RS07255 (C7M25_01457) - 1437762..1438982 (-) 1221 WP_160223301.1 LCP family protein -
  C7M25_RS07260 (C7M25_01458) - 1438987..1439634 (-) 648 WP_061581228.1 YigZ family protein -
  C7M25_RS07265 (C7M25_01459) degS 1439857..1441020 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C7M25_RS07270 (C7M25_01460) degU 1441097..1441786 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M25_RS07275 (C7M25_01461) - 1441884..1442732 (+) 849 WP_003151387.1 DegV family protein -
  C7M25_RS07280 (C7M25_01462) comFA 1442841..1444226 (+) 1386 WP_160223300.1 DEAD/DEAH box helicase Machinery gene
  C7M25_RS07285 (C7M25_01463) - 1444284..1444568 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  C7M25_RS07290 comFC 1444574..1445263 (+) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  C7M25_RS07295 (C7M25_01465) - 1445337..1445756 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  C7M25_RS07300 (C7M25_01466) flgM 1445826..1446092 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M25_RS07305 (C7M25_01467) - 1446107..1446589 (+) 483 WP_003151394.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=283014 C7M25_RS07270 WP_003219701.1 1441097..1441786(+) (degU) [Bacillus velezensis strain SRCM102747]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=283014 C7M25_RS07270 WP_003219701.1 1441097..1441786(+) (degU) [Bacillus velezensis strain SRCM102747]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment