Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C7M23_RS08445 Genome accession   NZ_CP028209
Coordinates   1640975..1641619 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1635975..1646619
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS08415 (C7M23_01654) - 1636391..1636759 (-) 369 WP_014477834.1 hypothetical protein -
  C7M23_RS08420 - 1636873..1636998 (-) 126 WP_003228793.1 hypothetical protein -
  C7M23_RS08425 (C7M23_01655) degQ 1637220..1637360 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C7M23_RS08430 (C7M23_01656) - 1637545..1638405 (+) 861 WP_041850585.1 polyprenyl synthetase family protein -
  C7M23_RS08435 (C7M23_01657) comX 1638418..1638582 (+) 165 WP_015384519.1 competence pheromone ComX -
  C7M23_RS08440 (C7M23_01658) comP 1638594..1640894 (+) 2301 WP_088300729.1 histidine kinase Regulator
  C7M23_RS08445 (C7M23_01659) comA 1640975..1641619 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C7M23_RS08450 (C7M23_01660) yuxO 1641638..1642018 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  C7M23_RS08455 (C7M23_01661) mnhG 1642061..1642435 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  C7M23_RS08460 (C7M23_01662) mrpF 1642419..1642703 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C7M23_RS08465 (C7M23_01663) mrpE 1642703..1643179 (-) 477 WP_029318490.1 Na+/H+ antiporter subunit E -
  C7M23_RS08470 (C7M23_01664) mrpD 1643185..1644666 (-) 1482 WP_003228817.1 Na+/H+ antiporter subunit D -
  C7M23_RS08475 (C7M23_01665) mrpC 1644659..1645000 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C7M23_RS08480 (C7M23_01666) mrpB 1645000..1645431 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=282864 C7M23_RS08445 WP_003220716.1 1640975..1641619(+) (comA) [Bacillus subtilis strain SRCM102745]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=282864 C7M23_RS08445 WP_003220716.1 1640975..1641619(+) (comA) [Bacillus subtilis strain SRCM102745]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAATGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment