Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   C7M23_RS06490 Genome accession   NZ_CP028209
Coordinates   1248619..1250010 (+) Length   463 a.a.
NCBI ID   WP_160243189.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102745     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1243619..1255010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS06470 (C7M23_01268) yvyE 1244771..1245424 (-) 654 WP_003227979.1 YigZ family protein -
  C7M23_RS06475 (C7M23_01269) degS 1245641..1246798 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M23_RS06480 (C7M23_01270) degU 1246881..1247570 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M23_RS06485 (C7M23_01271) fakBA 1247668..1248513 (+) 846 WP_003227986.1 DegV family protein -
  C7M23_RS06490 (C7M23_01272) comFA 1248619..1250010 (+) 1392 WP_160243189.1 ATP-dependent helicase ComFA Machinery gene
  C7M23_RS06495 (C7M23_01273) comFB 1250070..1250366 (+) 297 WP_015483764.1 late competence protein ComFB -
  C7M23_RS06500 (C7M23_01274) comFC 1250330..1251052 (+) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  C7M23_RS06505 (C7M23_01275) yvyF 1251126..1251545 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M23_RS06510 (C7M23_01276) flgM 1251626..1251892 (+) 267 WP_024572695.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M23_RS06515 (C7M23_01277) flgN 1251908..1252390 (+) 483 WP_131228158.1 flagellar protein FlgN -
  C7M23_RS06520 (C7M23_01278) flgK 1252409..1253932 (+) 1524 WP_131228157.1 flagellar hook-associated protein FlgK -
  C7M23_RS06525 (C7M23_01279) flgL 1253943..1254839 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52646.66 Da        Isoelectric Point: 9.8572

>NTDB_id=282858 C7M23_RS06490 WP_160243189.1 1248619..1250010(+) (comFA) [Bacillus subtilis strain SRCM102745]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWEEENEPNWQSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELVPRLKAAFQGADISALYGGSDDKGRLSPIMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHIKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=282858 C7M23_RS06490 WP_160243189.1 1248619..1250010(+) (comFA) [Bacillus subtilis strain SRCM102745]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCATGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGGAAGAGGAAAATGA
ACCAAACTGGCAGTCAATTAAACTGACATGGGACGGCAAGCTTTCAAGCGGACAACAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGTTCCAAGGCT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGATTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATATAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(120-268)

Helicase conserved C-terminal domain (Helicase_C)

(327-423)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

98.488

100

0.985

Multiple sequence alignment