Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C7M23_RS06480 Genome accession   NZ_CP028209
Coordinates   1246881..1247570 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain SRCM102745     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1241881..1252570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M23_RS06460 (C7M23_01266) tagO 1242447..1243523 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  C7M23_RS06465 (C7M23_01267) tagV 1243596..1244771 (-) 1176 WP_003227977.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  C7M23_RS06470 (C7M23_01268) yvyE 1244771..1245424 (-) 654 WP_003227979.1 YigZ family protein -
  C7M23_RS06475 (C7M23_01269) degS 1245641..1246798 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  C7M23_RS06480 (C7M23_01270) degU 1246881..1247570 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M23_RS06485 (C7M23_01271) fakBA 1247668..1248513 (+) 846 WP_003227986.1 DegV family protein -
  C7M23_RS06490 (C7M23_01272) comFA 1248619..1250010 (+) 1392 WP_160243189.1 ATP-dependent helicase ComFA Machinery gene
  C7M23_RS06495 (C7M23_01273) comFB 1250070..1250366 (+) 297 WP_015483764.1 late competence protein ComFB -
  C7M23_RS06500 (C7M23_01274) comFC 1250330..1251052 (+) 723 WP_029725992.1 comF operon protein ComFC Machinery gene
  C7M23_RS06505 (C7M23_01275) yvyF 1251126..1251545 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M23_RS06510 (C7M23_01276) flgM 1251626..1251892 (+) 267 WP_024572695.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M23_RS06515 (C7M23_01277) flgN 1251908..1252390 (+) 483 WP_131228158.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=282857 C7M23_RS06480 WP_003219701.1 1246881..1247570(+) (degU) [Bacillus subtilis strain SRCM102745]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=282857 C7M23_RS06480 WP_003219701.1 1246881..1247570(+) (degU) [Bacillus subtilis strain SRCM102745]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment