NTDB

Overview

Name	recF	Type	Machinery gene
Locus tag	SPCG_RS11595	Genome accession	NC_010582
Coordinates	2193179..2194276 (+)	Length	365 a.a.
NCBI ID	WP_000266650.1	Uniprot ID	B2INP4
Organism	Streptococcus pneumoniae CGSP14
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2188179..2199276

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPCG_RS11570 (SPCG_2188)	pgsA	2188700..2189245 (-)	546	WP_000712129.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
SPCG_RS11575 (SPCG_2189)	rodZ	2189256..2190077 (-)	822	WP_001227958.1	cytoskeleton protein RodZ	-
SPCG_RS11580 (SPCG_2190)	yfmH	2190119..2191402 (-)	1284	WP_000170191.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
SPCG_RS11585 (SPCG_2191)	yfmF	2191399..2192649 (-)	1251	WP_000424272.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
SPCG_RS11590 (SPCG_2192)	yaaA	2192808..2193176 (+)	369	WP_000455903.1	S4 domain-containing protein YaaA	-
SPCG_RS11595 (SPCG_2193)	recF	2193179..2194276 (+)	1098	WP_000266650.1	DNA replication/repair protein RecF	Machinery gene
SPCG_RS11600 (SPCG_2194)	guaB	2194327..2195805 (-)	1479	WP_000073428.1	IMP dehydrogenase	-
SPCG_RS11605 (SPCG_2195)	trpS	2195957..2196982 (-)	1026	WP_000165460.1	tryptophan--tRNA ligase	-
SPCG_RS11610 (SPCG_2196)	-	2197188..2198810 (+)	1623	WP_000958770.1	ATP-binding cassette domain-containing protein	-

Sequence

Protein

Download Length: 365 a.a. Molecular weight: 41881.98 Da Isoelectric Point: 8.6747

                                >NTDB_id=28272 SPCG_RS11595 WP_000266650.1 2193179..2194276(+) (recF) [Streptococcus pneumoniae CGSP14]

MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTQTDKNLIHFDEEQLHLSGLVQKKTGS

IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR

NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQPSVNITDKQNLSESFKI

ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ

LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNGN

Nucleotide

Download Length: 1098 bp

                                >NTDB_id=28272 SPCG_RS11595 WP_000266650.1 2193179..2194276(+) (recF) [Streptococcus pneumoniae CGSP14]

ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT

CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA

CTCAAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC

ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA

TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT

TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA

AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG

TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC

AGATCGAAGAGTTGTCAATATCCTATCAACCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT

GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA

TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG

AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG

TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC

AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAGGCTGCTGTAAATGGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	B2INP4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
recF	Streptococcus pneumoniae R6	99.178	100	0.992
recF	Bacillus subtilis subsp. subtilis str. 168	45.902	100	0.46

Detailed information NTG0028272