Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C7M21_RS06055 Genome accession   NZ_CP028207
Coordinates   1188376..1189065 (+) Length   229 a.a.
NCBI ID   WP_197200179.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102743     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1183376..1194065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M21_RS06030 (C7M21_01206) degS 1183659..1184822 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C7M21_RS06035 (C7M21_01207) degU 1184899..1185588 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M21_RS06040 (C7M21_01208) - 1185686..1186534 (+) 849 WP_003151387.1 DegV family protein -
  C7M21_RS06045 (C7M21_01209) comFA 1186643..1188028 (+) 1386 WP_160223300.1 DEAD/DEAH box helicase Machinery gene
  C7M21_RS06050 (C7M21_01210) - 1188086..1188370 (+) 285 WP_007407481.1 late competence development ComFB family protein -
  C7M21_RS06055 comFC 1188376..1189065 (+) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  C7M21_RS06060 (C7M21_01212) - 1189139..1189558 (+) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  C7M21_RS06065 (C7M21_01213) flgM 1189628..1189894 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M21_RS06070 (C7M21_01214) - 1189909..1190391 (+) 483 WP_003151394.1 flagellar protein FlgN -
  C7M21_RS06075 (C7M21_01215) flgK 1190407..1191924 (+) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  C7M21_RS06080 (C7M21_01216) flgL 1191936..1192853 (+) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  C7M21_RS06085 (C7M21_01217) - 1192944..1193513 (+) 570 WP_032867077.1 DUF6470 family protein -
  C7M21_RS06090 (C7M21_01218) fliW 1193543..1193974 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25257.89 Da        Isoelectric Point: 8.0779

>NTDB_id=282709 C7M21_RS06055 WP_197200179.1 1188376..1189065(+) (comFC) [Bacillus velezensis strain SRCM102743]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTVGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=282709 C7M21_RS06055 WP_197200179.1 1188376..1189065(+) (comFC) [Bacillus velezensis strain SRCM102743]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAACTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGTGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment