Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   C7M20_RS16870 Genome accession   NZ_CP028206
Coordinates   3439909..3441072 (-) Length   387 a.a.
NCBI ID   WP_007407484.1    Uniprot ID   A3KLC1
Organism   Bacillus velezensis strain SRCM102742     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3434909..3446072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M20_RS16840 (C7M20_03399) - 3435173..3435592 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  C7M20_RS16845 comFC 3435666..3436355 (-) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  C7M20_RS16850 (C7M20_03401) - 3436361..3436645 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  C7M20_RS16855 (C7M20_03402) comFA 3436703..3438088 (-) 1386 WP_160223300.1 DEAD/DEAH box helicase Machinery gene
  C7M20_RS16860 (C7M20_03403) - 3438197..3439045 (-) 849 WP_003151387.1 DegV family protein -
  C7M20_RS16865 (C7M20_03404) degU 3439143..3439832 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M20_RS16870 (C7M20_03405) degS 3439909..3441072 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C7M20_RS16875 (C7M20_03406) - 3441295..3441942 (+) 648 WP_061581228.1 YigZ family protein -
  C7M20_RS16880 (C7M20_03407) - 3441947..3443167 (+) 1221 WP_160223301.1 LCP family protein -
  C7M20_RS16885 (C7M20_03408) - 3443266..3444342 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -
  C7M20_RS16890 (C7M20_03409) tuaH 3444475..3445671 (-) 1197 WP_076424609.1 teichuronic acid biosynthesis protein TuaH -

Sequence

Protein


Download         Length: 387 a.a.        Molecular weight: 45014.78 Da        Isoelectric Point: 6.8616

>NTDB_id=282675 C7M20_RS16870 WP_007407484.1 3439909..3441072(-) (degS) [Bacillus velezensis strain SRCM102742]
MNKSKMDSKVLDSILMKMLKTVDGSKDEVFQIGEQSRQQYEQLVEELKQIKQQVYEVIELGDKLEVHTRHARNRLSEVSR
NFHKFSEEEIRNAYEKAHKLQVELTMIQQREKQLRERRDDLERRLLGLQEIIERSESLVSQITVVLNYLNQDLRQVGLLL
ADAQAKQDFGLRIIEAQEEERKRVSREIHDGPAQMLANVMMRSELIERIFRDRGTEDGFQEIRNLRQNVRNALYEVRRII
YDLRPMALDDLGLIPTLRKYLYTTEEYNGKVKIHFQCIGDTENQRLAPQFEVALFRLAQEAVTNALKHSESEEITVKVEV
TADFVVLIIKDNGKGFDIKDAKQKKNKSFGLLGMKERVDLLEGTITIDSKIGLGTFIMIKVPLSLGL

Nucleotide


Download         Length: 1164 bp        

>NTDB_id=282675 C7M20_RS16870 WP_007407484.1 3439909..3441072(-) (degS) [Bacillus velezensis strain SRCM102742]
ATGAATAAATCGAAGATGGACTCCAAAGTTTTGGATTCTATACTTATGAAAATGCTGAAAACCGTGGACGGGAGCAAGGA
CGAGGTTTTTCAAATCGGAGAGCAGTCGCGCCAGCAATATGAGCAGCTGGTTGAAGAACTCAAACAGATCAAACAGCAGG
TCTACGAAGTCATTGAGCTGGGCGACAAACTTGAAGTTCATACGCGGCACGCACGAAACCGCTTGTCTGAAGTAAGCAGA
AATTTCCATAAGTTCAGCGAAGAAGAAATTCGCAACGCCTATGAAAAGGCGCACAAACTTCAAGTGGAACTGACGATGAT
CCAACAGCGTGAAAAGCAGCTGCGGGAGCGCAGAGATGATTTAGAACGCCGGCTTTTGGGGCTTCAGGAAATCATTGAAC
GGTCAGAATCATTGGTCAGCCAAATAACCGTCGTTCTGAATTACCTGAATCAAGACCTTCGCCAAGTTGGGCTTCTTCTT
GCCGATGCGCAGGCTAAACAAGATTTCGGTTTAAGAATCATTGAAGCCCAAGAGGAAGAAAGAAAAAGAGTTTCCAGAGA
AATTCATGACGGTCCCGCGCAAATGCTGGCAAATGTCATGATGAGATCGGAATTAATTGAACGGATCTTCCGCGACCGCG
GCACGGAGGACGGATTTCAGGAAATCAGAAATCTGCGGCAGAATGTGCGGAATGCCCTTTACGAAGTCAGAAGGATTATA
TATGATTTAAGACCGATGGCATTGGACGATCTCGGGCTGATTCCGACACTGAGAAAATATCTTTATACAACTGAAGAATA
CAACGGAAAGGTGAAAATACATTTTCAGTGTATCGGAGACACGGAGAACCAAAGGCTTGCCCCGCAATTTGAAGTGGCGC
TTTTCCGTCTCGCTCAGGAAGCCGTCACAAATGCACTCAAGCATTCAGAATCAGAGGAAATTACAGTAAAAGTGGAAGTA
ACCGCTGATTTTGTCGTTCTCATCATTAAGGACAACGGAAAAGGCTTTGATATTAAGGATGCTAAACAAAAGAAAAACAA
GTCATTCGGCTTGCTGGGAATGAAAGAAAGAGTAGATCTGCTTGAAGGAACGATAACGATAGACTCTAAAATAGGTCTTG
GGACATTTATCATGATTAAGGTTCCGTTATCTCTCGGCCTATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(291-384)

Sensor protein DegS (DegS)

(12-170)

Histidine kinase (HisKA_3)

(180-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLC1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

95.584

99.483

0.951

Multiple sequence alignment