Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   C7M20_RS16865 Genome accession   NZ_CP028206
Coordinates   3439143..3439832 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SRCM102742     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3434143..3444832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M20_RS16830 (C7M20_03397) - 3434340..3434822 (-) 483 WP_003151394.1 flagellar protein FlgN -
  C7M20_RS16835 (C7M20_03398) flgM 3434837..3435103 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M20_RS16840 (C7M20_03399) - 3435173..3435592 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  C7M20_RS16845 comFC 3435666..3436355 (-) 690 WP_197200179.1 phosphoribosyltransferase family protein Machinery gene
  C7M20_RS16850 (C7M20_03401) - 3436361..3436645 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  C7M20_RS16855 (C7M20_03402) comFA 3436703..3438088 (-) 1386 WP_160223300.1 DEAD/DEAH box helicase Machinery gene
  C7M20_RS16860 (C7M20_03403) - 3438197..3439045 (-) 849 WP_003151387.1 DegV family protein -
  C7M20_RS16865 (C7M20_03404) degU 3439143..3439832 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M20_RS16870 (C7M20_03405) degS 3439909..3441072 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  C7M20_RS16875 (C7M20_03406) - 3441295..3441942 (+) 648 WP_061581228.1 YigZ family protein -
  C7M20_RS16880 (C7M20_03407) - 3441947..3443167 (+) 1221 WP_160223301.1 LCP family protein -
  C7M20_RS16885 (C7M20_03408) - 3443266..3444342 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=282674 C7M20_RS16865 WP_003219701.1 3439143..3439832(-) (degU) [Bacillus velezensis strain SRCM102742]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=282674 C7M20_RS16865 WP_003219701.1 3439143..3439832(-) (degU) [Bacillus velezensis strain SRCM102742]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment