Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   D9Y32_RS02250 Genome accession   NZ_CP033218
Coordinates   435020..435736 (-) Length   238 a.a.
NCBI ID   WP_009329065.1    Uniprot ID   A0ABX3I5L7
Organism   Bacillus licheniformis strain TCCC 11148     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 430020..440736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D9Y32_RS23995 - 432210..432647 (-) 438 WP_126430393.1 NTTRR-F1 domain -
  D9Y32_RS02240 (D9Y32_02245) - 432867..434093 (-) 1227 WP_142782105.1 NTTRR-F1 domain -
  D9Y32_RS02245 (D9Y32_02250) - 434220..434912 (-) 693 WP_142782106.1 N-acetyltransferase -
  D9Y32_RS02250 (D9Y32_02255) treR 435020..435736 (-) 717 WP_009329065.1 trehalose operon repressor Regulator
  D9Y32_RS02255 (D9Y32_02260) treC 435758..437446 (-) 1689 WP_061577025.1 alpha,alpha-phosphotrehalase -
  D9Y32_RS02260 (D9Y32_02265) treP 437520..438932 (-) 1413 WP_003179744.1 PTS system trehalose-specific EIIBC component -
  D9Y32_RS02265 (D9Y32_02270) - 439122..440532 (-) 1411 Protein_431 alanine/glycine:cation symporter family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27767.56 Da        Isoelectric Point: 5.8721

>NTDB_id=282669 D9Y32_RS02250 WP_009329065.1 435020..435736(-) (treR) [Bacillus licheniformis strain TCCC 11148]
MKINKYMMIYKQIAEQIDQSILNAGDILPSENDLAEQHDTSRETVRKALNVLAQNGYIQKIKGKGSVVLHREKMQFPVSG
LVSFKELSETLGKETSTTVHEFGLTHPDAYIQKQLRTSGDEEVWRVVRSRNINGERIILDKDYFIRKHVPLLTKEICEDS
IYQYLEDECGLVISYAHKEIVVEPCTAEDQEYLDLNGYEHIVVVKNFVFLDDTTLFQYTESRHRLDKFRFVDFARREK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=282669 D9Y32_RS02250 WP_009329065.1 435020..435736(-) (treR) [Bacillus licheniformis strain TCCC 11148]
ATGAAGATCAACAAGTATATGATGATTTACAAACAAATCGCGGAACAAATCGATCAAAGCATACTGAATGCCGGAGATAT
CCTGCCGTCTGAAAACGACCTTGCCGAACAGCACGACACCTCGAGGGAAACCGTTCGGAAAGCGCTGAACGTGCTTGCTC
AGAACGGATATATTCAGAAGATTAAAGGGAAGGGGTCAGTCGTGCTGCACAGGGAGAAAATGCAGTTCCCGGTTTCCGGT
TTGGTCAGCTTTAAGGAGCTTTCAGAAACGCTCGGAAAAGAGACAAGCACGACGGTCCATGAGTTCGGCTTGACGCATCC
GGACGCATATATTCAAAAGCAGCTCCGCACTTCCGGAGATGAAGAGGTATGGCGGGTTGTCAGGTCGCGGAACATCAACG
GAGAGCGTATCATCCTGGATAAAGACTATTTTATCCGCAAACACGTGCCGCTTTTAACGAAAGAAATATGCGAGGACTCG
ATCTATCAATACCTTGAAGATGAATGCGGGCTCGTCATCAGCTATGCTCATAAGGAAATTGTAGTCGAGCCATGTACGGC
AGAGGATCAAGAGTATTTGGATCTGAACGGATACGAGCACATTGTGGTCGTGAAAAATTTCGTTTTTCTTGATGATACGA
CCTTGTTTCAATATACGGAAAGCAGACACCGCCTTGATAAATTCCGGTTTGTCGATTTTGCAAGAAGAGAAAAGTAG

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(91-229)

Bacterial regulatory proteins, gntR family (GntR)

(6-68)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

41.525

99.16

0.412

Multiple sequence alignment