Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C7M18_RS04310 Genome accession   NZ_CP028204
Coordinates   873659..874348 (-) Length   229 a.a.
NCBI ID   WP_199449054.1    Uniprot ID   -
Organism   Bacillus velezensis strain SRCM102755     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 868659..879348
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M18_RS04275 (C7M18_00858) fliW 868750..869181 (-) 432 WP_021494095.1 flagellar assembly protein FliW -
  C7M18_RS04280 (C7M18_00859) - 869211..869780 (-) 570 WP_003151397.1 DUF6470 family protein -
  C7M18_RS04285 (C7M18_00860) flgL 869871..870788 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  C7M18_RS04290 (C7M18_00861) flgK 870800..872317 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  C7M18_RS04295 (C7M18_00862) - 872333..872815 (-) 483 WP_003151394.1 flagellar protein FlgN -
  C7M18_RS04300 (C7M18_00863) flgM 872830..873096 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M18_RS04305 (C7M18_00864) - 873166..873585 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  C7M18_RS04310 (C7M18_00865) comFC 873659..874348 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  C7M18_RS04315 (C7M18_00866) - 874354..874638 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  C7M18_RS04320 (C7M18_00867) comFA 874696..876081 (-) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  C7M18_RS04325 (C7M18_00868) - 876189..877037 (-) 849 WP_003151387.1 DegV family protein -
  C7M18_RS04330 (C7M18_00869) degU 877135..877824 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M18_RS04335 (C7M18_00870) degS 877901..879064 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25275.91 Da        Isoelectric Point: 8.2927

>NTDB_id=282472 C7M18_RS04310 WP_199449054.1 873659..874348(-) (comFC) [Bacillus velezensis strain SRCM102755]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSACSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=282472 C7M18_RS04310 WP_199449054.1 873659..874348(-) (comFC) [Bacillus velezensis strain SRCM102755]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCGCATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment