Detailed information NTG0282430

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EAF06_RS06010
• Genome accession: NZ_CP033158
• Coordinates: 1266485..1267477 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain CM IVRI KOL-1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1261485..1272477

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EAF06_RS05990 (EAF06_06220)	otnK	1262260..1263522 (+)	1263	WP_000590403.1	3-oxo-tetronate kinase	-
EAF06_RS05995 (EAF06_06225)	ygbL	1263519..1264157 (+)	639	WP_001278994.1	aldolase	-
EAF06_RS06000 (EAF06_06230)	ygbM	1264162..1264938 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
EAF06_RS06005 (EAF06_06235)	ygbN	1265027..1266391 (+)	1365	WP_000104441.1	GntP family transporter	-
EAF06_RS06010 (EAF06_06240)	rpoS	1266485..1267477 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EAF06_RS06015 (EAF06_06245)	nlpD	1267540..1268634 (-)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
EAF06_RS06020 (EAF06_06250)	pcm	1268819..1269445 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EAF06_RS06025 (EAF06_06255)	surE	1269439..1270200 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
EAF06_RS06030 (EAF06_06260)	truD	1270181..1271230 (-)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
EAF06_RS06035 (EAF06_06265)	ispF	1271227..1271706 (-)	480	WP_001219242.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EAF06_RS06040 (EAF06_06270)	ispD	1271706..1272415 (-)	710	Protein_1194	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=282430 EAF06_RS06010 WP_000081550.1 1266485..1267477(-) (rpoS) [Escherichia coli strain CM IVRI KOL-1]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=282430 EAF06_RS06010 WP_000081550.1 1266485..1267477(-) (rpoS) [Escherichia coli strain CM IVRI KOL-1]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715