Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C7M17_RS13765 Genome accession   NZ_CP028202
Coordinates   2635058..2635507 (+) Length   149 a.a.
NCBI ID   WP_160245378.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2630058..2640507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS13745 (C7M17_02719) hxlR 2631269..2631631 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  C7M17_RS13750 (C7M17_02720) hxlA 2631863..2632495 (+) 633 WP_122895017.1 3-hexulose-6-phosphate synthase -
  C7M17_RS13755 (C7M17_02721) hxlB 2632501..2633058 (+) 558 WP_017696129.1 6-phospho-3-hexuloisomerase -
  C7M17_RS13760 (C7M17_02722) tlpC 2633169..2634890 (+) 1722 WP_160245377.1 methyl-accepting chemotaxis protein TlpC -
  C7M17_RS13765 (C7M17_02723) nucA/comI 2635058..2635507 (+) 450 WP_160245378.1 DNA-entry nuclease Machinery gene
  C7M17_RS13770 (C7M17_02724) nin/comJ 2635534..2635932 (+) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  C7M17_RS13775 (C7M17_02725) bglC 2635969..2637402 (-) 1434 WP_160245379.1 6-phospho-beta-glucosidase -
  C7M17_RS13780 (C7M17_02726) - 2637475..2638203 (-) 729 WP_046160039.1 AAA family ATPase -
  C7M17_RS13785 (C7M17_02727) - 2638222..2638563 (-) 342 WP_032724911.1 DUF3147 family protein -
  C7M17_RS13790 (C7M17_02728) - 2638551..2638973 (-) 423 WP_201449129.1 MarR family transcriptional regulator -
  C7M17_RS13795 (C7M17_02729) yckD 2639101..2639433 (-) 333 WP_015252849.1 YckD family protein -
  C7M17_RS13800 - 2639515..2639835 (-) 321 Protein_2749 RDD family protein -
  C7M17_RS13805 - 2639872..2640069 (-) 198 Protein_2750 hypothetical protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16455.45 Da        Isoelectric Point: 4.5282

>NTDB_id=282429 C7M17_RS13765 WP_160245378.1 2635058..2635507(+) (nucA/comI) [Bacillus subtilis strain SRCM102754]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSLTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=282429 C7M17_RS13765 WP_160245378.1 2635058..2635507(+) (nucA/comI) [Bacillus subtilis strain SRCM102754]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCTAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.315

100

0.973

Multiple sequence alignment