Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C7M17_RS07090 Genome accession   NZ_CP028202
Coordinates   1325141..1326034 (-) Length   297 a.a.
NCBI ID   WP_122894537.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102754     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1320141..1331034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M17_RS07075 (C7M17_01393) xerC 1320513..1321427 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  C7M17_RS07080 (C7M17_01394) trmFO 1321495..1322802 (-) 1308 WP_122894536.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C7M17_RS07085 (C7M17_01395) topA 1322878..1324953 (-) 2076 WP_003245599.1 type I DNA topoisomerase -
  C7M17_RS07090 (C7M17_01396) dprA 1325141..1326034 (-) 894 WP_122894537.1 DNA-processing protein DprA Machinery gene
  C7M17_RS07095 (C7M17_01397) sucD 1326095..1326997 (-) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  C7M17_RS07100 (C7M17_01398) sucC 1327026..1328183 (-) 1158 WP_003244732.1 ADP-forming succinate--CoA ligase subunit beta -
  C7M17_RS07105 (C7M17_01399) ylqH 1328356..1328637 (-) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  C7M17_RS07110 (C7M17_01400) - 1328634..1330364 (-) 1731 WP_122894538.1 hypothetical protein -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32907.21 Da        Isoelectric Point: 9.9142

>NTDB_id=282404 C7M17_RS07090 WP_122894537.1 1325141..1326034(-) (dprA) [Bacillus subtilis strain SRCM102754]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQFYPKLPRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILVSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEEIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=282404 C7M17_RS07090 WP_122894537.1 1325141..1326034(-) (dprA) [Bacillus subtilis strain SRCM102754]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAATTTTATCCAAAGCTCCCGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCTGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGACGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGGTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCACTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGAGATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  dprA Legionella pneumophila strain ERS1305867

37.793

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

41.353

89.562

0.37

Multiple sequence alignment