Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D0871_RS05375 Genome accession   NZ_CP033141
Coordinates   1065146..1065745 (+) Length   199 a.a.
NCBI ID   WP_005460088.1    Uniprot ID   Q87MQ4
Organism   Vibrio parahaemolyticus strain 160807     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1060146..1070745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0871_RS27260 (D0871_05350) - 1061298..1061429 (+) 132 WP_005380608.1 hypothetical protein -
  D0871_RS05355 (D0871_05355) - 1061502..1061849 (+) 348 WP_023585236.1 YbaN family protein -
  D0871_RS05360 (D0871_05360) apt 1062015..1062560 (+) 546 WP_005460112.1 adenine phosphoribosyltransferase -
  D0871_RS05365 (D0871_05365) dnaX 1062569..1064704 (+) 2136 WP_065770778.1 DNA polymerase III subunit gamma/tau -
  D0871_RS05370 (D0871_05370) - 1064787..1065116 (+) 330 WP_005460082.1 YbaB/EbfC family nucleoid-associated protein -
  D0871_RS05375 (D0871_05375) recR 1065146..1065745 (+) 600 WP_005460088.1 recombination mediator RecR Machinery gene
  D0871_RS05380 (D0871_05380) aqpZ 1065796..1066494 (-) 699 WP_005460095.1 aquaporin Z -
  D0871_RS05385 (D0871_05385) - 1066701..1067960 (-) 1260 WP_042760673.1 amino acid permease -
  D0871_RS05390 (D0871_05390) - 1068278..1068658 (+) 381 WP_005479566.1 RidA family protein -
  D0871_RS05395 (D0871_05395) - 1068674..1069951 (+) 1278 WP_069514676.1 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha -
  D0871_RS05400 (D0871_05400) - 1069979..1070638 (+) 660 WP_005397228.1 PAS domain-containing protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21725.73 Da        Isoelectric Point: 5.7468

>NTDB_id=282356 D0871_RS05375 WP_005460088.1 1065146..1065745(+) (recR) [Vibrio parahaemolyticus strain 160807]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQSMTEIGHCAECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CREHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=282356 D0871_RS05375 WP_005460088.1 1065146..1065745(+) (recR) [Vibrio parahaemolyticus strain 160807]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTAGGTCCCAAGTCGGCGCAACG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGATGCGCTGAGTCAGTCAATGACCGAAA
TTGGTCACTGTGCTGAATGTCGAACTTTTACTGAAGAAGAAGTTTGCCACATTTGTACTAACCCAAAACGCCAAGAAAAC
GGCCAAATTTGTGTAGTAGAAAGCCCGGCAGATATCGCAGCAGTCGAAGCGACGGGTCAATACTCCGGTCGATACTTTGT
GCTTATGGGGCATTTGTCTCCGCTTGATGGCATCGGTCCAAGTGATATTGGTTTAGACGTGCTTGATTATCGTCTACGTC
GAGGTGATATTTCTGAAGTGATCCTTGCAACCAACCCAACGGTTGAGGGAGAAGCTACTGCTCACTATATTGCGGAGTTG
TGCAGAGAGCACCAAGTCGAAGCTAGCCGTATCGCGCACGGTGTGCCTGTAGGTGGGGAGCTTGAGCTCGTAGATGGCAC
GACCTTGTCACATTCATTATTGGGTCGACATAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87MQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

100

0.447
  recR Bacillus subtilis subsp. subtilis str. 168

43.216

100

0.432

Multiple sequence alignment