Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C7M16_RS14555 Genome accession   NZ_CP028201
Coordinates   2878090..2878734 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2873090..2883734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS14520 (C7M16_02865) mrpB 2874280..2874711 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  C7M16_RS14525 (C7M16_02866) mrpC 2874711..2875052 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C7M16_RS14530 (C7M16_02867) mrpD 2875045..2876526 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  C7M16_RS14535 (C7M16_02868) mrpE 2876532..2877008 (+) 477 WP_128422372.1 Na+/H+ antiporter subunit E -
  C7M16_RS14540 (C7M16_02869) mrpF 2877008..2877292 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C7M16_RS14545 (C7M16_02870) mnhG 2877276..2877650 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  C7M16_RS14550 (C7M16_02871) yuxO 2877691..2878071 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  C7M16_RS14555 (C7M16_02872) comA 2878090..2878734 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C7M16_RS14560 (C7M16_02873) comP 2878815..2881115 (-) 2301 WP_088300729.1 histidine kinase Regulator
  C7M16_RS14565 (C7M16_02874) comX 2881127..2881291 (-) 165 WP_015384519.1 competence pheromone ComX -
  C7M16_RS14570 (C7M16_02875) - 2881304..2882164 (-) 861 WP_128422373.1 polyprenyl synthetase family protein -
  C7M16_RS14575 (C7M16_02876) degQ 2882349..2882489 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C7M16_RS14580 - 2882711..2882836 (+) 126 WP_144500545.1 hypothetical protein -
  C7M16_RS14585 (C7M16_02877) - 2882950..2883318 (+) 369 WP_144500544.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=282355 C7M16_RS14555 WP_003220716.1 2878090..2878734(-) (comA) [Bacillus subtilis strain SRCM102753]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=282355 C7M16_RS14555 WP_003220716.1 2878090..2878734(-) (comA) [Bacillus subtilis strain SRCM102753]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment