Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C7M16_RS07540 Genome accession   NZ_CP028201
Coordinates   1468766..1469659 (+) Length   297 a.a.
NCBI ID   WP_160221583.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102753     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1463766..1474659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M16_RS07520 (C7M16_01483) - 1464436..1466166 (+) 1731 WP_160221581.1 hypothetical protein -
  C7M16_RS07525 (C7M16_01484) ylqH 1466163..1466444 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  C7M16_RS07530 (C7M16_01485) sucC 1466617..1467774 (+) 1158 WP_160221582.1 ADP-forming succinate--CoA ligase subunit beta -
  C7M16_RS07535 (C7M16_01486) sucD 1467803..1468705 (+) 903 WP_003238566.1 succinate--CoA ligase subunit alpha -
  C7M16_RS07540 (C7M16_01487) dprA 1468766..1469659 (+) 894 WP_160221583.1 DNA-processing protein DprA Machinery gene
  C7M16_RS07545 (C7M16_01488) topA 1469847..1471922 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  C7M16_RS07550 (C7M16_01489) trmFO 1471998..1473305 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  C7M16_RS07555 (C7M16_01490) xerC 1473373..1474287 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32946.29 Da        Isoelectric Point: 9.9142

>NTDB_id=282325 C7M16_RS07540 WP_160221583.1 1468766..1469659(+) (dprA) [Bacillus subtilis strain SRCM102753]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKTAALKNEIEQLYPKLQRVLAAYREQGINIIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKEICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=282325 C7M16_RS07540 WP_160221583.1 1468766..1469659(+) (dprA) [Bacillus subtilis strain SRCM102753]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAACAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACATCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGAGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGCATTATCAGCGGACTGAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTGTTTGATCCTTACGCCGGCGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.316

100

0.983
  dprA Legionella pneumophila strain ERS1305867

37.838

99.663

0.377
  dprA Lactococcus lactis subsp. cremoris KW2

42.105

89.562

0.377

Multiple sequence alignment