Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D0784_RS11565 Genome accession   NZ_CP033134
Coordinates   2465383..2465982 (-) Length   199 a.a.
NCBI ID   WP_005432989.1    Uniprot ID   A0AAQ2XYN5
Organism   Vibrio campbellii strain 170502     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2460383..2470982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS11540 (D0784_11535) - 2460474..2461130 (-) 657 WP_005432985.1 helix-turn-helix transcriptional regulator -
  D0784_RS11545 (D0784_11540) - 2461159..2462436 (-) 1278 WP_050909895.1 serine dehydratase subunit alpha family protein -
  D0784_RS11550 (D0784_11545) - 2462451..2462831 (-) 381 WP_005432926.1 RidA family protein -
  D0784_RS11555 (D0784_11550) - 2463146..2464405 (+) 1260 WP_043883578.1 amino acid permease -
  D0784_RS11560 (D0784_11555) aqpZ 2464631..2465329 (+) 699 WP_005432982.1 aquaporin Z -
  D0784_RS11565 (D0784_11560) recR 2465383..2465982 (-) 600 WP_005432989.1 recombination mediator RecR Machinery gene
  D0784_RS11570 (D0784_11565) - 2466013..2466342 (-) 330 WP_005432961.1 YbaB/EbfC family nucleoid-associated protein -
  D0784_RS11575 (D0784_11570) dnaX 2466425..2468623 (-) 2199 WP_122019927.1 DNA polymerase III subunit gamma/tau -
  D0784_RS11580 (D0784_11575) apt 2468632..2469177 (-) 546 WP_005432901.1 adenine phosphoribosyltransferase -
  D0784_RS11585 (D0784_11580) - 2469344..2469748 (-) 405 WP_038891442.1 YbaN family protein -
  D0784_RS27230 (D0784_11585) - 2469764..2469895 (-) 132 WP_005432936.1 hypothetical protein -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21711.75 Da        Isoelectric Point: 5.7468

>NTDB_id=282284 D0784_RS11565 WP_005432989.1 2465383..2465982(-) (recR) [Vibrio campbellii strain 170502]
MRTSHMLEQLMEALRCLPGVGPKSAQRMAFHLLQRDRKGGLQLADALSQAMTEIGHCTECRTFTEEEVCHICTNPKRQEN
GQICVVESPADIAAVEATGQYSGRYFVLMGHLSPLDGIGPSDIGLDVLDYRLRRGDISEVILATNPTVEGEATAHYIAEL
CKEHQVEASRIAHGVPVGGELELVDGTTLSHSLLGRHKI

Nucleotide


Download         Length: 600 bp        

>NTDB_id=282284 D0784_RS11565 WP_005432989.1 2465383..2465982(-) (recR) [Vibrio campbellii strain 170502]
ATGCGTACCAGTCATATGCTGGAACAATTGATGGAGGCCTTACGTTGTCTACCTGGGGTTGGCCCCAAGTCGGCGCAGCG
TATGGCCTTTCATTTGTTACAGCGTGATAGAAAAGGCGGTCTGCAACTGGCAGACGCGCTTAGCCAAGCAATGACAGAAA
TTGGCCATTGCACCGAGTGTCGTACTTTCACTGAAGAAGAAGTTTGTCATATTTGTACCAACCCAAAACGCCAAGAAAAT
GGTCAGATTTGTGTGGTAGAAAGTCCGGCAGACATCGCAGCAGTAGAAGCAACGGGTCAATACTCGGGTCGATACTTTGT
ACTGATGGGACATTTATCACCGCTGGACGGAATTGGTCCAAGTGATATTGGTCTAGATGTATTGGATTACCGTCTGCGCC
GAGGAGATATCTCTGAGGTGATTCTCGCTACCAACCCAACGGTAGAAGGGGAAGCGACGGCTCATTACATCGCGGAACTG
TGTAAAGAACACCAAGTGGAAGCAAGCCGCATTGCACACGGTGTACCAGTTGGTGGCGAGCTTGAGCTCGTGGACGGAAC
AACCTTGTCACACTCCCTTCTGGGTCGACACAAGATTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAQ2XYN5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

100

0.452
  recR Bacillus subtilis subsp. subtilis str. 168

44.221

100

0.442
  recR Streptococcus pneumoniae R6

37.306

96.985

0.362