Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   D0784_RS02645 Genome accession   NZ_CP033134
Coordinates   558212..558940 (-) Length   242 a.a.
NCBI ID   WP_122018847.1    Uniprot ID   -
Organism   Vibrio campbellii strain 170502     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 553212..563940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0784_RS02620 (D0784_02620) trpR 553481..553783 (+) 303 WP_005425333.1 trp operon repressor -
  D0784_RS02625 (D0784_02625) yjjX 553899..554432 (-) 534 WP_041853416.1 inosine/xanthosine triphosphatase -
  D0784_RS02630 (D0784_02630) pheA 554475..555653 (-) 1179 WP_005533293.1 prephenate dehydratase -
  D0784_RS02635 (D0784_02635) hpf 555897..556223 (-) 327 WP_005425319.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  D0784_RS02640 (D0784_02640) - 556600..558069 (-) 1470 WP_162998965.1 lytic transglycosylase F -
  D0784_RS02645 (D0784_02645) comL 558212..558940 (-) 729 WP_122018847.1 outer membrane protein assembly factor BamD Machinery gene
  D0784_RS02650 (D0784_02650) rluD 559077..560054 (+) 978 WP_005425317.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  D0784_RS02655 (D0784_02655) pgeF 560056..560784 (+) 729 WP_122018849.1 peptidoglycan editing factor PgeF -
  D0784_RS02660 (D0784_02660) clpC 560931..563504 (+) 2574 WP_038893011.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 242 a.a.        Molecular weight: 27846.64 Da        Isoelectric Point: 5.4287

>NTDB_id=282250 D0784_RS02645 WP_122018847.1 558212..558940(-) (comL) [Vibrio campbellii strain 170502]
MKHQTLTGLLAVSLLFGCASKEEIVPDVPPSELYADAQTSLQSGNWLSAIEKLEALDSRYPFGAYSEQVQLDLIYAYYKN
DDLALGLATISRFMRLNPTHEKMDWVLYMRGLSHMAQDRNFMHDLFNVDRSDRDPEPVKKAFDDFKKLLERYPNSPYAED
SQKRMVALKNRLANYDLATADFYLRREAWIAAINRSQELQKAFPDTEAARKSLEIQLEAYKQLKLDNAVARTEELIKLNP
AN

Nucleotide


Download         Length: 729 bp        

>NTDB_id=282250 D0784_RS02645 WP_122018847.1 558212..558940(-) (comL) [Vibrio campbellii strain 170502]
ATGAAACATCAGACTTTAACAGGCCTTTTAGCGGTATCCCTTCTGTTTGGCTGTGCAAGCAAAGAAGAAATCGTTCCTGA
TGTGCCACCTTCTGAACTGTATGCAGACGCGCAAACTTCTCTGCAAAGCGGTAACTGGCTTTCTGCCATCGAAAAATTAG
AAGCTTTGGATTCGCGTTACCCGTTTGGTGCCTACTCTGAGCAGGTACAACTTGACCTTATCTACGCGTACTACAAAAAT
GATGACCTAGCATTAGGTCTGGCAACGATCTCTCGCTTTATGCGTTTGAACCCGACTCACGAAAAAATGGACTGGGTTTT
GTACATGCGTGGTTTGAGCCACATGGCGCAAGACCGTAACTTCATGCATGACTTGTTCAACGTTGATCGTAGTGACCGTG
ATCCAGAGCCAGTGAAGAAAGCATTCGACGACTTCAAAAAGCTGCTAGAACGTTACCCGAATAGCCCATATGCGGAAGAT
TCACAGAAACGTATGGTGGCGCTAAAGAACCGACTTGCAAACTACGACCTAGCGACAGCAGACTTCTACTTGCGTCGTGA
AGCTTGGATTGCAGCGATCAACCGTTCTCAAGAGCTTCAAAAAGCGTTCCCTGACACAGAAGCGGCGCGCAAATCACTTG
AGATTCAGTTAGAAGCCTACAAGCAATTGAAACTGGATAACGCCGTTGCAAGAACGGAAGAGCTTATCAAGCTTAACCCA
GCAAACTAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(26-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

39.583

99.174

0.393
  comL Neisseria gonorrhoeae MS11

39.167

99.174

0.388