Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C9J86_RS01190 Genome accession   NZ_CP028190
Coordinates   200278..200673 (-) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain CFSAN018749     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 195278..205673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J86_RS01160 (C9J86_01160) thiE 195739..196380 (-) 642 WP_000483150.1 thiamine phosphate synthase -
  C9J86_RS01165 (C9J86_01165) thiM 196382..197173 (-) 792 WP_053865678.1 hydroxyethylthiazole kinase -
  C9J86_RS01170 (C9J86_01170) thiD 197157..197987 (-) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  C9J86_RS01175 (C9J86_01175) tenA 197980..198669 (-) 690 WP_000396068.1 thiaminase II -
  C9J86_RS01185 (C9J86_01185) sceD 199194..199889 (-) 696 WP_000752015.1 lytic transglycosylase SceD -
  C9J86_RS01190 (C9J86_01190) ssb 200278..200673 (-) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  C9J86_RS01195 (C9J86_01195) - 200867..201307 (+) 441 WP_000846746.1 YwpF-like family protein -
  C9J86_RS01200 (C9J86_01200) fabZ 201364..201804 (-) 441 WP_053865679.1 3-hydroxyacyl-ACP dehydratase FabZ -
  C9J86_RS01205 (C9J86_01205) murA 201838..203103 (-) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  C9J86_RS01210 (C9J86_01210) - 203214..203447 (-) 234 WP_000384523.1 DUF1146 family protein -
  C9J86_RS01225 (C9J86_01225) - 204326..204730 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=282192 C9J86_RS01190 WP_000932696.1 200278..200673(-) (ssb) [Staphylococcus aureus strain CFSAN018749]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=282192 C9J86_RS01190 WP_000932696.1 200278..200673(-) (ssb) [Staphylococcus aureus strain CFSAN018749]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985

Multiple sequence alignment