Detailed information    

insolico Bioinformatically predicted

Overview


Name   coiA   Type   Machinery gene
Locus tag   C9J90_RS13740 Genome accession   NZ_CP028189
Coordinates   2669797..2670783 (+) Length   328 a.a.
NCBI ID   WP_000959292.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CFSAN018750     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2664797..2675783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J90_RS13715 (C9J90_13695) opp4B 2665010..2665972 (+) 963 WP_000239820.1 oligopeptide ABC transporter permease -
  C9J90_RS13720 (C9J90_13700) opp4C 2665984..2666865 (+) 882 WP_001180280.1 oligopeptide ABC transporter permease -
  C9J90_RS13725 (C9J90_13705) trpS 2666907..2667896 (-) 990 WP_031837887.1 tryptophan--tRNA ligase -
  C9J90_RS13730 (C9J90_13710) spxA 2668191..2668586 (+) 396 WP_000258003.1 transcriptional regulator SpxA -
  C9J90_RS13735 (C9J90_13715) mecA 2668957..2669676 (+) 720 WP_001217723.1 adaptor protein MecA -
  C9J90_RS13740 (C9J90_13720) coiA 2669797..2670783 (+) 987 WP_000959292.1 competence protein CoiA Machinery gene
  C9J90_RS13745 (C9J90_13725) pepF 2670831..2672639 (+) 1809 WP_000082725.1 oligoendopeptidase F -
  C9J90_RS13750 (C9J90_13730) yjbH 2673099..2673905 (-) 807 WP_000896697.1 protease adaptor protein YjbH -
  C9J90_RS13755 (C9J90_13735) - 2673928..2674293 (-) 366 WP_000214070.1 truncated hemoglobin YjbI -
  C9J90_RS13760 (C9J90_13740) - 2674397..2674990 (-) 594 WP_000224611.1 CYTH domain-containing protein -
  C9J90_RS13765 (C9J90_13745) - 2675176..2675523 (+) 348 WP_031589545.1 hypothetical protein -

Sequence


Protein


Download         Length: 328 a.a.        Molecular weight: 38884.55 Da        Isoelectric Point: 9.7683

>NTDB_id=282186 C9J90_RS13740 WP_000959292.1 2669797..2670783(+) (coiA) [Staphylococcus aureus strain CFSAN018750]
MLVALNEEKERVLATTALRKTQYFCPVCGKQVILKRGLKVISHFAHKHLAEQKCFNNETIKHYKSKLILAQMIQQQGFKV
EIEPFLKEIKQIPDILINNKYVIELQYSPIPYKQILQRTEGLKKMGYKVSWLLNDVDYCHNKVKFNHFQSMFINPFTRKL
HTFNLEKKQIMMFQQIQYLGGHKYVAEKRNAKISELFNEAPCDYHAVYKLSKFAINQYIKYCRWQNSVLEPTLSAMYQLQ
LTDQEVVHNYGYIFPEQIYIKNHPIEWQLQVDLWLKNGKSKLVNDNLNYFKLKKFIVALESKTAIIEKLINNYLNICSDK
GNDVQILF

Nucleotide


Download         Length: 987 bp        

>NTDB_id=282186 C9J90_RS13740 WP_000959292.1 2669797..2670783(+) (coiA) [Staphylococcus aureus strain CFSAN018750]
ATGTTAGTAGCTTTAAATGAAGAAAAGGAACGTGTGTTAGCAACTACTGCATTGAGAAAGACACAATATTTTTGTCCGGT
GTGTGGCAAGCAAGTTATTTTAAAGCGTGGGCTCAAAGTAATTAGTCATTTTGCACATAAACATTTAGCGGAACAAAAAT
GTTTTAATAATGAAACGATTAAACATTATAAAAGTAAATTGATTTTAGCACAGATGATACAGCAACAAGGATTTAAAGTA
GAGATAGAGCCATTTTTAAAAGAAATAAAACAAATTCCGGATATTTTGATTAATAATAAATATGTTATTGAGCTACAGTA
TTCGCCAATTCCTTATAAACAGATTCTTCAACGAACGGAAGGTTTAAAGAAAATGGGATATAAAGTAAGTTGGTTATTAA
ATGATGTTGATTATTGTCATAATAAAGTGAAGTTCAATCATTTTCAAAGTATGTTTATTAATCCATTCACTCGAAAACTT
CATACGTTCAATTTAGAGAAAAAACAAATAATGATGTTTCAACAAATACAATATTTAGGCGGGCACAAATATGTCGCTGA
AAAAAGAAATGCCAAAATTAGTGAGTTGTTTAATGAGGCGCCTTGTGATTATCATGCTGTTTATAAATTATCAAAGTTCG
CAATTAATCAATATATCAAATATTGTCGCTGGCAAAATTCTGTTTTAGAACCCACTTTAAGTGCAATGTATCAATTACAG
TTAACTGATCAAGAAGTAGTGCACAATTATGGTTATATTTTTCCAGAGCAAATTTATATTAAAAATCATCCTATTGAGTG
GCAATTACAAGTTGATTTATGGTTAAAGAATGGAAAAAGCAAATTAGTAAATGACAATCTTAATTATTTTAAACTGAAAA
AATTTATTGTTGCTCTAGAAAGTAAAACAGCAATTATAGAAAAACTTATTAACAATTATTTAAATATTTGTTCAGATAAA
GGTAATGACGTGCAAATTTTGTTCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Staphylococcus aureus MW2

99.39

100

0.994

  coiA Staphylococcus aureus N315

97.561

100

0.976


Multiple sequence alignment