Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C9J81_RS09955 Genome accession   NZ_CP028187
Coordinates   1872657..1873427 (-) Length   256 a.a.
NCBI ID   WP_002818781.1    Uniprot ID   A0A622RR74
Organism   Campylobacter coli strain CFSAN054106     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1867657..1878427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J81_RS09925 (C9J81_09930) aspS 1867793..1869544 (+) 1752 WP_002781656.1 aspartate--tRNA ligase -
  C9J81_RS09930 (C9J81_09935) - 1869541..1870116 (+) 576 WP_002781658.1 adenylate kinase -
  C9J81_RS09935 (C9J81_09940) ppa 1870126..1870644 (+) 519 WP_002776378.1 inorganic diphosphatase -
  C9J81_RS09940 (C9J81_09945) msrA 1870692..1871192 (+) 501 WP_002793323.1 peptide-methionine (S)-S-oxide reductase MsrA -
  C9J81_RS09945 (C9J81_09950) - 1871415..1872269 (-) 855 WP_374188682.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  C9J81_RS09950 (C9J81_09955) ruvX 1872280..1872660 (-) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  C9J81_RS09955 (C9J81_09960) dprA 1872657..1873427 (-) 771 WP_002818781.1 DNA-processing protein DprA Machinery gene
  C9J81_RS09960 (C9J81_09965) - 1873417..1874469 (-) 1053 WP_002776371.1 divergent polysaccharide deacetylase family protein -
  C9J81_RS09965 (C9J81_09970) ilvC 1874472..1875494 (-) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  C9J81_RS09970 (C9J81_09975) - 1875617..1877551 (+) 1935 WP_107128221.1 ribonuclease R family protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28817.22 Da        Isoelectric Point: 5.0727

>NTDB_id=282146 C9J81_RS09955 WP_002818781.1 1872657..1873427(-) (dprA) [Campylobacter coli strain CFSAN054106]
MQSEIPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCRQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=282146 C9J81_RS09955 WP_002818781.1 1872657..1873427(-) (dprA) [Campylobacter coli strain CFSAN054106]
ATGCAAAGTGAAATACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATTAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGGCTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAGACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A622RR74

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.562

100

0.766
  dprA Helicobacter pylori 26695

47.581

96.875

0.461

Multiple sequence alignment