Detailed information    

insolico Bioinformatically predicted

Overview

Name   CJE0566   Type   Regulator
Locus tag   C9J79_RS05580 Genome accession   NZ_CP028185
Coordinates   1044205..1044855 (-) Length   216 a.a.
NCBI ID   WP_070318297.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CFSAN054107     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1039205..1049855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C9J79_RS05545 (C9J79_05545) - 1039583..1040587 (+) 1005 WP_079264874.1 hypothetical protein -
  C9J79_RS05550 (C9J79_05550) tlyA 1040584..1041345 (+) 762 WP_002902002.1 TlyA family RNA methyltransferase -
  C9J79_RS05555 (C9J79_05555) ribF 1041311..1042165 (+) 855 WP_070318296.1 bifunctional riboflavin kinase/FAD synthetase -
  C9J79_RS05560 (C9J79_05560) cmoA 1042152..1042862 (+) 711 WP_002859101.1 carboxy-S-adenosyl-L-methionine synthase CmoA -
  C9J79_RS05565 (C9J79_05565) - 1042852..1043073 (-) 222 WP_002859102.1 EexN family lipoprotein -
  C9J79_RS05570 (C9J79_05570) - 1043070..1043504 (-) 435 WP_002855128.1 EexN family lipoprotein -
  C9J79_RS05575 (C9J79_05575) - 1043562..1044194 (-) 633 WP_002852232.1 trimeric intracellular cation channel family protein -
  C9J79_RS05580 (C9J79_05580) CJE0566 1044205..1044855 (-) 651 WP_070318297.1 DNA/RNA non-specific endonuclease Regulator
  C9J79_RS05585 (C9J79_05585) nth 1044852..1045478 (-) 627 WP_002852225.1 endonuclease III -
  C9J79_RS05590 (C9J79_05590) peb4 1045559..1046380 (+) 822 WP_002852119.1 peptidylprolyl isomerase PEB4 -
  C9J79_RS05595 (C9J79_05595) fbaA 1046380..1047444 (+) 1065 WP_052794082.1 class II fructose-bisphosphate aldolase -
  C9J79_RS05600 (C9J79_05600) - 1047539..1048981 (+) 1443 WP_070318298.1 MotA/TolQ/ExbB proton channel family protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 25498.14 Da        Isoelectric Point: 9.6319

>NTDB_id=282112 C9J79_RS05580 WP_070318297.1 1044205..1044855(-) (CJE0566) [Campylobacter jejuni strain CFSAN054107]
MKIFIFLLTISLNIFALEPYKPSADFSSYFNNINCSQILDKFFYLNCYDYKLKGTKAVAYKVEASNLKDRQIKKRPRFED
DTNIPKKYRTTWSNYKNSGYTRGHTAPNASFSFSKAAQNSVFLMSNITPQNAQINNKIWNEIEQRERNLALEFQSIEVLN
LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQAPNYEVNDENIKQYQINCDKF

Nucleotide


Download         Length: 651 bp        

>NTDB_id=282112 C9J79_RS05580 WP_070318297.1 1044205..1044855(-) (CJE0566) [Campylobacter jejuni strain CFSAN054107]
ATGAAAATTTTCATCTTTTTACTCACTATATCTCTTAATATTTTTGCCTTAGAACCTTACAAGCCTAGTGCTGATTTTTC
TTCTTATTTTAACAATATAAATTGCTCGCAAATCTTAGATAAGTTTTTTTATCTAAATTGCTATGATTATAAACTCAAAG
GCACAAAAGCTGTTGCTTATAAGGTAGAAGCTTCAAATTTGAAAGATAGACAAATCAAAAAACGCCCTCGCTTTGAAGAT
GATACAAATATTCCTAAAAAATACCGCACTACTTGGAGTAATTATAAAAACAGTGGTTACACACGAGGACACACTGCACC
CAATGCTTCTTTTAGCTTTAGTAAAGCTGCTCAAAATTCAGTATTTTTAATGAGTAATATTACCCCACAAAATGCACAAA
TAAATAATAAAATTTGGAATGAAATCGAACAAAGAGAAAGAAATTTAGCTTTAGAATTTCAAAGTATCGAAGTTTTAAAT
TTAGTACTTTACGATAAAGAACCACAATACATTAAAAACCGTATTGCTATACCAAGTTTTTATGTGAAAATTATTAAAAC
TCCGAAATTTAAAGAATGCTATCAAGCACCAAACTACGAAGTAAATGATGAAAATATTAAACAGTATCAAATAAATTGTG
ATAAATTTTAA

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(34-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  CJE0566 Campylobacter jejuni RM1221

69.036

91.204

0.63
  CJE1441 Campylobacter jejuni RM1221

68.528

91.204

0.625

Multiple sequence alignment